Plant Circular RNA Database

Detail information of Os11g0546000_circ_g.5

			
						 General Information
					
						CircRNA Name
						Os11g0546000_circ_g.5
					
						ID in PlantcircBase
						osa_circ_009565
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr11: 20130380-20132162  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os11g0546000						
					
						Parent gene annotation
						
							Similar to RNase L inhibitor-like protein. (Os11t0546000-01);Sim
ilar to RNase L inhibitor-like protein. (Os11t0546000-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os11g0546000_circ_g.1 Os11g0546000_circ_g.2 Os11g0546000_circ_g.3 Os11g0546000_circ_g.4 						
					
						Support reads
						1
					
						Tissues
						shoot, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os11t0546000-01:5
Os11t0546000-02:5

General Information
CircRNA Name	Os11g0546000_circ_g.5
ID in PlantcircBase	osa_circ_009565
Alias	NA
Organism	Oryza sativa
Position	chr11: 20130380-20132162 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os11g0546000
Parent gene annotation	Similar to RNase L inhibitor-like protein. (Os11t0546000-01);Sim ilar to RNase L inhibitor-like protein. (Os11t0546000-02)
Parent gene strand	+
Alternative splicing	Os11g0546000_circ_g.1 Os11g0546000_circ_g.2 Os11g0546000_circ_g.3 Os11g0546000_circ_g.4
Support reads	1
Tissues	shoot, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os11t0546000-01:5 Os11t0546000-02:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CATGAAGCCACTGCAAATAGAGCAACTCATGGACCAGGAAGTTATCAATTTATCAGGTGGTGAG
CTACAAAGGGTGGCAATATGCCTTTGCCTTGGAAAGaatccaccagactggcaggaaattctga
catacttccgtgggtctgaactccaaaactattttacacgcatattggaggataaccttaaggt
attgcatt

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							AATCCACCAGACTGGCAGGAAATTCTGACATACTTCCGTGGGTCTGAACTCCAAAACTATTTTA
CACGCATATTGGAGGATAACCTTAAGGTATTGCATTGCCACTTCTTTTTATCCATTGTGTTTGT
CCTTCTTTTAGGCTTTTTTAGCATGTACTCTGCGACAGTAATAAATATCTTAATTTGTCGTTTA
CCATCACTATGTGTGGGCTCTGAGTACAATAGCATCAGTGAGGTATTTGTTTCAGTCTTATTTT
TGGTTCTATAGCATCATACATTTTTCTGGTAAACTTTTGTATGCATGCAAACAGTAACAACACA
TAGCGTCAGCAAGATACTATTGATCTTCCACTTATGCAACCTGCATTAAATTATGCACTCAAAT
ATTGTCCGAATCTCAGGTATTAAATATTGCTTTGATTTATTACATGTCAAAAAACCCTTAGTAG
CCAAAAAACAGATATTCTGGCATTGGAATAGACTGTCGCTATGTTTGATATTATCAGTATTGAT
TGCTTCATACTTCTATTAACTTACATGCATGCTGACATGCTCTATTTCTCTTTCCTAGGCAATC
ATCAAGCCTCAGTATGTGGATCACATTCCAAAAGCTGTCCAGGGAAATGTTGGGCAAGTACTTG
ACCAGAAAGACGAGAGAGGCGTGAAAGCTGAGCTTTGTGTCGACCTTGAATTGAACCAAGTTAT
TGATCGAAATGTAGGAGATCTTTCTGGTGGTGAGCTCCAGAGATTTGCGATAGCAGTTGTTGCT
GTGCAGAATGCGGAAATTTTCATGTTTGATGAGCCATCAAGTTACCTTGATGTTAAGCAGAGGC
TTAAGGCTGCACAAGTCGTTCGGTCTTTGCTTAGACCCAACAGGTAACATATTCGTTATGTTAT
TACTATGATTATGTAAATTTAAACTTTGACGAATGCAATATCAAGTTCTATCCTATGTATTTTC
AGCTATGTGATTGTTGTGGAGCATGATTTGAGTGTCCTGGATTACTTGTCCGACTTTATTTGCT
GCTTGTATGGGAAGCCAGGTGCTTATGGTGTAGTTACTTTGCCGTTTTCGGTCCGAGAAGGTAT
CAATATTTTCTTGGCCGGATTTGTTCCAACAGAAAATCTACGGTTTCGAGATGAATCTCTTACT
TTTAAGGTAACCTGTGCCTTTTCAGATTTAGATTTTTGGCTATGTGATGAAACATTGTTTTTAT
GTATGTTCTGTCCTTTCAGATTGCGGAGACTCAGGAAAGTGCTGAGGAGATTGAGACATACCAG
CGATATAAGTACCCTACTATGAGTAAAACACAGGGCAATTTCAAGCTCACTGTTGTTGAGGGTG
AGTTCACTGATTCACAGATTGTTGTGATGCTTGGTGAGAATGGGACAGGGAAAACTACATTCAT
CAGAATGCTGGTACGCCACCCTTCCTCCGTAACTACCCTAATCTTCAGTTCAAAATCAATCAAC
TAAATCTGCAGTTATCTTTCTGATTTGTTATGAATGGATAGGCTGGGTTGTTGAAGCCAGACAC
TGTGGAAGGAACTGAGATTGAAATTCCTGAATTTAATGTGTCCTACAAGCCTCAGAAGATTAGC
CCGAAATTCCAGCATTCTGTGAGGCACTTGCTTCATCAGAAAATACGGGATTCATATACTCATC
CTCAGTTTGTGTCTGATGTCATGAAGCCACTGCAAATAGAGCAACTCATGGACCAGGAAGTTAT
CAATTTATCAGGTGGTGAGCTACAAAGGGTGGCAATATGCCTTTGCCTTGGAAAG
						
					

			
		

Sequences
Splice junction sequence	CATGAAGCCACTGCAAATAGAGCAACTCATGGACCAGGAAGTTATCAATTTATCAGGTGGTGAG CTACAAAGGGTGGCAATATGCCTTTGCCTTGGAAAGaatccaccagactggcaggaaattctga catacttccgtgggtctgaactccaaaactattttacacgcatattggaggataaccttaaggt attgcatt
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	AATCCACCAGACTGGCAGGAAATTCTGACATACTTCCGTGGGTCTGAACTCCAAAACTATTTTA CACGCATATTGGAGGATAACCTTAAGGTATTGCATTGCCACTTCTTTTTATCCATTGTGTTTGT CCTTCTTTTAGGCTTTTTTAGCATGTACTCTGCGACAGTAATAAATATCTTAATTTGTCGTTTA CCATCACTATGTGTGGGCTCTGAGTACAATAGCATCAGTGAGGTATTTGTTTCAGTCTTATTTT TGGTTCTATAGCATCATACATTTTTCTGGTAAACTTTTGTATGCATGCAAACAGTAACAACACA TAGCGTCAGCAAGATACTATTGATCTTCCACTTATGCAACCTGCATTAAATTATGCACTCAAAT ATTGTCCGAATCTCAGGTATTAAATATTGCTTTGATTTATTACATGTCAAAAAACCCTTAGTAG CCAAAAAACAGATATTCTGGCATTGGAATAGACTGTCGCTATGTTTGATATTATCAGTATTGAT TGCTTCATACTTCTATTAACTTACATGCATGCTGACATGCTCTATTTCTCTTTCCTAGGCAATC ATCAAGCCTCAGTATGTGGATCACATTCCAAAAGCTGTCCAGGGAAATGTTGGGCAAGTACTTG ACCAGAAAGACGAGAGAGGCGTGAAAGCTGAGCTTTGTGTCGACCTTGAATTGAACCAAGTTAT TGATCGAAATGTAGGAGATCTTTCTGGTGGTGAGCTCCAGAGATTTGCGATAGCAGTTGTTGCT GTGCAGAATGCGGAAATTTTCATGTTTGATGAGCCATCAAGTTACCTTGATGTTAAGCAGAGGC TTAAGGCTGCACAAGTCGTTCGGTCTTTGCTTAGACCCAACAGGTAACATATTCGTTATGTTAT TACTATGATTATGTAAATTTAAACTTTGACGAATGCAATATCAAGTTCTATCCTATGTATTTTC AGCTATGTGATTGTTGTGGAGCATGATTTGAGTGTCCTGGATTACTTGTCCGACTTTATTTGCT GCTTGTATGGGAAGCCAGGTGCTTATGGTGTAGTTACTTTGCCGTTTTCGGTCCGAGAAGGTAT CAATATTTTCTTGGCCGGATTTGTTCCAACAGAAAATCTACGGTTTCGAGATGAATCTCTTACT TTTAAGGTAACCTGTGCCTTTTCAGATTTAGATTTTTGGCTATGTGATGAAACATTGTTTTTAT GTATGTTCTGTCCTTTCAGATTGCGGAGACTCAGGAAAGTGCTGAGGAGATTGAGACATACCAG CGATATAAGTACCCTACTATGAGTAAAACACAGGGCAATTTCAAGCTCACTGTTGTTGAGGGTG AGTTCACTGATTCACAGATTGTTGTGATGCTTGGTGAGAATGGGACAGGGAAAACTACATTCAT CAGAATGCTGGTACGCCACCCTTCCTCCGTAACTACCCTAATCTTCAGTTCAAAATCAATCAAC TAAATCTGCAGTTATCTTTCTGATTTGTTATGAATGGATAGGCTGGGTTGTTGAAGCCAGACAC TGTGGAAGGAACTGAGATTGAAATTCCTGAATTTAATGTGTCCTACAAGCCTCAGAAGATTAGC CCGAAATTCCAGCATTCTGTGAGGCACTTGCTTCATCAGAAAATACGGGATTCATATACTCATC CTCAGTTTGTGTCTGATGTCATGAAGCCACTGCAAATAGAGCAACTCATGGACCAGGAAGTTAT CAATTTATCAGGTGGTGAGCTACAAAGGGTGGCAATATGCCTTTGCCTTGGAAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.276838292

Conservation Information
Conserved circRNAs	NA
PMCS	0.276838292

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							20131170-20132159(+)
20132145-20130423(+)
20130412-20132109(-)
						
					

						Potential amino acid sequence
						
							MFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLP
FSVREGINIFLAGFVPTENLRFRDESLTFKIAETQESAEEIETYQRYKYPTMSKTQGNFKLTVV
EGEFTDSQIVVMLGENGTGKTTFIRMLAGLLKPDTVEGTEIEIPEFNVSYKPQKISPKFQHSVR
HLLHQKIRDSYTHPQFVSDVMKPLQIEQLMDQEVINLSGGELQRVAICLCLGKNPPDWQEILTY
FRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERGVKAELCVDLELNQVI
DRNVGDLSGGELQRFAIAVVAVQNAEIFMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEH
DLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTENLRFRDESLTFKIAETQE
SAEEIETYQRYKYPTMSKTQGNFKLTVVEGEFTDSQIVVMLGENGTGKTTFIRMLAGLLKPDTV
EGTEIEIPEFNVSYKPQKISPKFQHSVRHLLHQKIRDSYTHPQFVSDVMKPLQIEQLMDQEVIN
LSGGELQRVAICLCLGKNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQG
NVGQVLDQKDERGVKAELCVDLELNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIFMFDEPSSY
LDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGIN
IFLAGFVPTENLRFRDESLTFKIAETQESAEEIETYQRYKYPTMSKTQGNFKLTVVEGEFTDSQ
IVVMLGENGTGKTTFIRMLAGLLKPDTVEGTEIEIPEFNVSYKPQKISPKFQHSVRHLLHQKIR
DSYTHPQFVSDVMKPLQIEQLMDQEVINLSGGELQRVAICLCLGKNPPDWQEILTYFRGSELQN
YFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERGVKAELCVDLELNQVIDRNVGDLS
GGELQRFAIAVVAVQNAEIFMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYL
SDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTENLRFRDESLTFKIAETQESAEEIETY
QRYKYPTMSKTQGNFKLTVVEGEFTDSQIVVMLGENGTGKTTFIRMLAGLLKPDTVEGTEIEIP
EFNVSYKPQKISPKFQHSVRHLLHQKIRDSYTHPQFVSDVMKPLQIEQLMDQEVINLSGGELQR
VAICLCLGK(+)
MPLPWKESTRLAGNSDILPWV*(+)
MSEFPASLVDSFQGKGILPPFVAHHLIN*(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	20131170-20132159(+) 20132145-20130423(+) 20130412-20132109(-)
Potential amino acid sequence	MFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLP FSVREGINIFLAGFVPTENLRFRDESLTFKIAETQESAEEIETYQRYKYPTMSKTQGNFKLTVV EGEFTDSQIVVMLGENGTGKTTFIRMLAGLLKPDTVEGTEIEIPEFNVSYKPQKISPKFQHSVR HLLHQKIRDSYTHPQFVSDVMKPLQIEQLMDQEVINLSGGELQRVAICLCLGKNPPDWQEILTY FRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERGVKAELCVDLELNQVI DRNVGDLSGGELQRFAIAVVAVQNAEIFMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEH DLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTENLRFRDESLTFKIAETQE SAEEIETYQRYKYPTMSKTQGNFKLTVVEGEFTDSQIVVMLGENGTGKTTFIRMLAGLLKPDTV EGTEIEIPEFNVSYKPQKISPKFQHSVRHLLHQKIRDSYTHPQFVSDVMKPLQIEQLMDQEVIN LSGGELQRVAICLCLGKNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQG NVGQVLDQKDERGVKAELCVDLELNQVIDRNVGDLSGGELQRFAIAVVAVQNAEIFMFDEPSSY LDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGIN IFLAGFVPTENLRFRDESLTFKIAETQESAEEIETYQRYKYPTMSKTQGNFKLTVVEGEFTDSQ IVVMLGENGTGKTTFIRMLAGLLKPDTVEGTEIEIPEFNVSYKPQKISPKFQHSVRHLLHQKIR DSYTHPQFVSDVMKPLQIEQLMDQEVINLSGGELQRVAICLCLGKNPPDWQEILTYFRGSELQN YFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERGVKAELCVDLELNQVIDRNVGDLS GGELQRFAIAVVAVQNAEIFMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYL SDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTENLRFRDESLTFKIAETQESAEEIETY QRYKYPTMSKTQGNFKLTVVEGEFTDSQIVVMLGENGTGKTTFIRMLAGLLKPDTVEGTEIEIP EFNVSYKPQKISPKFQHSVRHLLHQKIRDSYTHPQFVSDVMKPLQIEQLMDQEVINLSGGELQR VAICLCLGK(+) MPLPWKESTRLAGNSDILPWV(+) MSEFPASLVDSFQGKGILPPFVAHHLIN(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os11g0546000_circ_g.5

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