Detail information of Os05g0506600_circ_igg.1


General Information
CircRNA Name Os05g0506600_circ_igg.1
ID in PlantcircBase osa_circ_028455
Alias Os_ciR641
Organism Oryza sativa
Position chr5: 25026996-25031650  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads 70
Tissues root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCAGTCGCCGGCGCGCCACCGACGGCGAAGTTTACGCCATGGGAGACACTTGAGCTATTCGCTA
GGGAGGCTGGAAGGAAAGGGAGACCAAATTCCTCGGcaatgaaatcgatgatgactctcccatc
actcatgcggcctgtaggatggtcaaagaaggtcatgccgtaaggaagcttgtcattccacacg
ggcacaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAATGAAATCGATGATGACTCTCCCATCACTCATGCGGCCTGTAGGATGGTCAAAGAAGGTCAT
GCCGTAAGGAAGCTTGTCATTCCACACGGGCACAACCGGACTGGCCATGATGACGAAGTTGCCG
GTGTCGATGTACGAGTCTCCAAGAGAAAACATCGAGGTGAAAAACTGCGAGGTAGAGCTCACAC
GAGAGAGACAGAAGAGGAAGGCAATGGGGAATACAAGTTTGAGCTCCATGATGCTCTCTCTGCC
TGCTAGAAATGTGAAAGAAAAACAAAGACACAGCACAAGTAGAGAGGACCTTCTAGCTATTTAT
AACCGTAAGACATGACAGATGAAAAATAACCCATTGTTTAATACTTAAATTAGTACTTCCTCCA
TTCCATAATATAAGGCACAACTACTTTTTTTTATGTTCCATAATATAAGGCATGTATACATGCA
CACAATTAATTAGGACCTCTTCTCCATTAGATTATTGCTTTTTTAAGTCCTCCACCCTCAAGAT
CTCTAATTCTATTGGATGCATGCATTATATTTATTAAGGTGATCCAAACTATGAGATAATAATA
ATTATTTCTTGATCTTTGGGTTAAGAGTGGTTGTGCCTTATATTTTGTAACGGAGGGAGTACTC
CTTAACTACCCTTTGTCAACGAGGTGGCTAAGTTGTTGCTTGCTCAATAGTCAATACAGTTTGC
AATCCATCTGGAAAATAAATATATAAATGGCGTTGACAAAGATCACAAGGGTTCATTCCCTCTG
TGTGCTTAAATAGATGAGGTTTTAGGACGCGACCTTCAAGTTGATGTATGCAAAAAAAAATAAT
ATGTGAAAATTCTTTTAGTAGTTTTCTCATGATAAATATTTTCACGCCGATGTATTTTAATCAT
TTACATGAAAGTGATCGGAATAAACAATTACTCCCTTCGTTTTTAATAGATAACATCGTTGACT
TTTAAACATATGTCTAACTATTAGTTTTATTCAAAAATTTTATGTAAATATATAAGATATAAAA
AGTAAATTGCACCCATGGTATAACAACTTGGTAGGTGGGTGCGATATAGTATAAGAACATGAGA
ATTGAACATCCGAGTACAACAACTTGACAAGTAGGCGCGTTCTAGTACAAGAACTTGATAATTT
AGTATTTTGATGCATCAACTTAGCTAACATATGCTAGGTGATTTTTTTTTCACGATATCAATAT
GCAATTATATAGTAATCCTACGTATATTTATAATATTGGATTTAATCTTTAAGAATTATACTTC
ACATACAATTTACATTCAATTAACTTTTAAGATTTTTTTTTGTTTTCTTCACCTTCATAATAAT
ATTTTTTTACATCCAGTTTAATTGATTTTTATTTATTAGTTATTAGGATAAAAATAAAAATATG
CTTATACAAATACACGCCAATATATTGTCAAAATAAGTACTTAAAAATTGAATCTATAAAAAAA
TGCTCCAAATAATTAAGTTGCCGCATAACTTCTTAATTTATTGAATCAAAATCATATCTACCTT
GTAAGTTATTACATTTATATGATCACTTATAAAGTTTTTATATTAAATTATACCTATCTGCCAA
GTTGTTGCACTAGAACTTTCATTTCTCAAGTTCTTTCACCAAATTGCACCCATCTACCAAGTTG
ATGCACCGTCGGTGCAATTTACTGTAAATCATGCTTAAAGTACTTTGTGTGATAAAACAACTCA
CAAAAAAAACAATTGCATTAAAAAAATCAACGATGTCATTTATTAAAAAACCAGAGGTAGTATC
AAATATACACTTGGAGACTGTCACAATGCCATTAACAACATGTAAAAGAGAATAATGGAAGGAC
TAAGGAGGATATTGTAAGACCAAATTGCAATTTGACTATCTGAATCATTATCTTTTTTTAAAAA
AAAGTCCACTATGCCAGTTGCCACCCCGGAGGCACCGAGGGATAAGGGCTTGCATATTACACAA
TCGCTGGATGACTGGCTCCGCAATTTCAGAAAAGCTATATTGCGAGTTGGTCTTTTAATTACAA
CCAAGTTCAGAAAACTGCTTGTGCTTGAAAAAACTTTTCTGTAATGACAATGCACAGATAGCTT
TATTCACACGACGCATGGAATTGAAGCTTCCTCTGCAATCAATTTCAGGTTTCAACAGAAGCTC
AGCTGAGCCAACATGAAAGCTGGGAAATTTGAATTCAGTTTCCCCCAGAGGCTGATAATTTGGG
TTCAAATTTCCCCTGATTAAGCTCCAATCCTCCTCCTTTTTTTTTCTTTTTTGTGGGTAGCTCC
AAATTTCTTGTCAGCACCTCAGGGCCAAGATTTTCGGTAGCAGCTACAACTCCAAAATGGCTTC
AAAACCGTCGAAACAGTAGATATAACTGCTCAAATTTATGTGCTATGTCAGCTCATATGGCCGA
CCATGATACTACATCTGTTTGATCTTACGAGAACAGCAAGAAATTAGAACCAGCATGCCTAGCA
AATGTTTTTCTTTTTTGTTTTGTTTTGTTTACAAACTGTGTTGTACACACTTTTCTTTTTGCAT
GATATGCTATTGTAACACCGACCCAATCAGTACACAAACAGCGGAAATTTTGGAAATTATCTAG
AAGAAGAACTAATCCGATACTGGACACTAGGACTCACGACTCCACCACTACACGAATGGTGCTT
CCCCCCATAAATACATGGCAGGCATCTGCATCTCAATTCAAACAACAGGTTGATACCACATTGG
TAGATTTACCATGCTGCTAAGGATTATGCGATGGTTAATTTGTTTCAGCAAATCAATGGCGAAT
AGCATTCAAAATTGGTGGATCAGCGTAGGGACCATAGAGCCACCCCTTGGCAACATATCGGTAG
ACAGCCTCCGTGTAGTGAATCCCGTCCCAGGACACTGATGCTGTTGGATTCTTGCAAGCGACCA
CTCCAGGCATGGCGCAGGTAGCGCTTGCGTTCCAGTTATACACGCCACCAGTGCCACAGCAAGC
CTTGAGAACTCCATCGGCACCGAATCCTGCAGATGTAAATGTTCAGAGATAAGCCACTGCCTTA
GTAAGGTCCTGTTTGGGGAGTTTAAGATTCTGAGAATTTACTGATTGGTAGCCAACTTCTGAGA
ATTTAGAGAAACTGGGTTTTTCAGCTTCTGGGTTCTAGTTAATTTATTTTTTGGATTCTACAAC
TACAGATTCTCAGAATCTGGGTTTCTCAGAATCTGGGTGACAATCTGAACTGTTTGGGGGAGCT
AGAGATTCTAAGAGAAGCTGCAGCAGCTAGAAGCTCCCCCAAACAGACCCTAAGACTGACCATA
ATCCTTTCATAGTTTTGATTATAAAACGTTTGTATAAATTGGTTGACACTTTTTTATTAGAAAA
TGGGATAAACCCAGCCTCTGCATCCAATCAGATATACACAGCCAAAATCCTGGTTGATGTATGT
AACTTAACAAAGCTAGAACACAGTATGTACCAAATCGGCGAGGTTCTTGGGTGACTCGAATGAT
GGGTTGGTAGAAGTCGGCGAAGATGATCTTGGCATGAGGGTACTTGCGCCTGAGCCTGACGAGA
GCTGCGCGAAGCAGCGTGTTGTGCCTCTTGGCCACGCTGTTGATGGCACGCAGGCATCCGAGGC
CATCGTAGTCCGTCCTGTTGGGGCTCACTCGTTGCGTGAAGTGCTGGTGCACACCCTGTTGGTG
GGTTCCCCGGCACGACCACATAAACCGCGCCTTGGTTGATGAGACTCTGTGATGTGCAAATTAA
GCTGCAGATTTAGAATGTGGCTTGACAAATATTGCTCATTTTTCTTATATTCAGAAGCAACTTT
GCCATGGTGTGACAAAGAGATCAAACTTTTTTCTTGAAAACATAACAAACTCAAACCAAAGTAA
AACTTCACGGTATTACACTGGAGATTTGCTCCAATCCAGCAAAAAATACCTCGAGGTACCGGTA
CCCTACAGTACCAAATCGTTTCTGATCGTTGGATCTAACAATGCCCATCCTGCTCAGCTAGATT
CAATGATCTCAAACGATTTAGTACCGTGAGGTACCAGTACTTCGAGGTACTTTTTGCTGGATCG
GTGCAAATCTCATTACACTGAGTGATGGGTGTACCTCCACTCCCATGGTGATTTTTTTCACGAC
TCGAGGCATGTATGATTCGACCTCGTGTTTGGCCTTCCCAGCCATCCACATGAAGTTGTAGTCG
TTCACTCCAAACTCTCCAACGATAAATAGGGACTTACTGAAGCAGTTCTTGAAATCTGCAGTTT
GTTGAAATCAATTTAAGCCCACTGCGAAGTAGATACAAATACTCATTGGTTATATCTTCTCTGA
AGGCCAGAATGAATTCGATTATCTAAAAATAAAGATCAATGCTGATTATTGGCGCCTATGATTC
AGACTACTCGCCATTTGCATCTTCTTTGGTTGTGTTGCAAATCGATGGCTTGAGCTCCTCGAAC
CAGCCAAGCTGCACATCAAGTGAACTGTTCAGAAGCTTAAATGCCACAATGTTGTTCCTCTGGA
AGTAGTCGATGCCAGTCGCCGGCGCGCCACCGACGGCGAAGTTTACGCCATGGGAGACACTTGA
GCTATTCGCTAGGGAGGCTGGAAGGAAAGGGAGACCAAATTCCTCGG
Conservation Information
Conserved circRNAs NA
PMCS 0.280339576
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015