Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA008196_circ_g.2 |
ID in PlantcircBase | osi_circ_003917 |
Alias | 2:17350104|17350945 |
Organism | Oryza sativa ssp. indica |
Position | chr2: 17350104-17350945 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA008196 |
Parent gene annotation | NA |
Parent gene strand | + |
Alternative splicing | BGIOSGA008196_circ_g.1 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | BGIOSGA008196-TA:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
17350235-17350919(-) 17350175-17350127(+) 17350936-17350127(+) |
Potential amino acid sequence |
MKDNSGNSNITTQSVLSFKHFFDMPSNCFPFTVRIRRKNQIFCYESHLFGCM*(-) MLERQDALGCNVTVARVVFHEITEDAVKNALMSPRYIDMNLINAYLARRSLDYLIGFGISPLLW RKLPGCQSAGRVQFAALALLCDREAEIEQFNPEEYWTIDTDFKTQHSGPSNGLNLQAQIKHLNS KKLDQLSIWSQEEAQDIEKRIYSSQFEVIGIKRSKIHKNPPMPYITSSLQQDAANKLHFSAGYT MKIAQKLYEGITLSSEDATGLITYIRTDGFHSRKFDSCV*(+) MAFIAENLILASDPDREGETIAWHIKEMLERQDALGCNVTVARVVFHEITEDAVKNALMSPRYI DMNLINAYLARRSLDYLIGFGISPLLWRKLPGCQSAGRVQFAALALLCDREAEIEQFNPEEYWT IDTDFKTQHSGPSNGLNLQAQIKHLNSKKLDQLSIWSQEEAQDIEKRIYSSQFEVIGIKRSKIH KNPPMPYITSSLQQDAANKLHFSAGYTMKIAQKLYEGITLSSEDATGLITYIRTDGFHSRKFDS CV*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |