Detail information of Zm00001d005948_circ_igg.1


General Information
CircRNA Name Zm00001d005948_circ_igg.1
ID in PlantcircBase zma_circ_007327
Alias Zm02circ00088, ZmciR104
Organism Zea mays
Position chr2: 193530177-193534963  JBrowse»
Reference genome AGPv4.38
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Zm00001d005948_circ_igg.2
Support reads NA
Tissues leaf, endosperm
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATTCGCAATCAAAGAAAAACGACTAAAAAACTGATTACCGAATAAATACCGTTTCCGACCGTT
TTCATCCCTCGCCACTGCTTGCTATACAGATGCTGCtttgttgagaaacctgtctcgtctcagt
ataggatggttatgacgaaacttgatcatctctgagaaaaacctgaaatggccatcctttcttt
cttccaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTTGTTGAGAAACCTGTCTCGTCTCAGTATAGGATGGTTATGACGAAACTTGATCATCTCTGAG
AAAAACCTGAAATGGCCATCCTTTCTTTCTTCCAACTACATACATGTTAATTGGATAGGACATT
AGCATAACGCTGTTACATGCATCACTAAATAAATTACTAACAGAAAATTAACATATGTAACCTG
GCCCCACTGAAAATTATTTATGTGAGTATCATGTCCATAGCTATTGTTGTTTCCATAACGCGTG
TGACCATATTCATCTCCCATCAGCATCATTGGAGTGCCCTATTGTATATGATGTAATTCATCAA
GTTATACTCAGTTACACGTAAAAGGTAACTATGGTCGATAATACAAACCTGGGAAATCATTAAT
GCCACATGGAAGTTCTTCATTTGCCTAGAACGAAGACTTAACACATTCAAATCATTTGTTCCTC
CTGTAATATGGCAACAACAGAAATTTTAGTAACACTACGTAAAATTAAATGGAAAAACATCTCC
ATGCTTTAGTTTGAAAAGTCATACACGTATAGTTACTTGTCTAAATCACGTCATATAAGCATCA
ACAATACGAGTAACTTTTCAGTTCTGTTTATAAACTATGCAAACACTGACCCATCACATTCAAA
GTTCACTATTCTCCTGATTACTTTATTCAGGCATTTTTTTAAAATGGCACTTAATTATTTTGAA
CAACTTTACAGAACTATTCTTCATTCAAATATATCAGTATTATGCAGTGTGAAAAAAAAGATCT
CCCAACCTTTGATAACTCCGATATACAAACTAAATTTGGTATTCAGCGAAGTATTTACCTTCAA
TGCCACAGTTCCAGCTGTAGTTGTCATTGCACCCATCACGACCACCTTCTCCATTTGCATCATT
GTGCTGGATGATTTTTTATTTTATTCAAAAGAGGAATGTTAACACATAAGACACATTGAATATA
AGACTGCACAGTTTGCTACAGTTACCTTGGAGTTATACGAAACAAGGTCGCATAAAGTAAATCC
ATCATGAGCAATTACAAAGTTCACACTATGGTAAGGCTTCCGATTGTTCACCTGACAACCAAGA
CATCATGATGCTTCATTTCACAAATGACTGTTGGAAAAGGAAACTATTGCTGCTTTTCAAGCCA
ATAAAATCTTAGAACTCGTCAATAAAGCCTCAAAAAATTCCATAAGGAAATAGGAAATGTCAGG
AAATAGCATCGACAACTGATTTTATAATTTCAAATGGCATCTCACTAGCTTCTATGTTACTTGC
TATCAGAGGCATAGCCAGAATTTTTCCTTAGGGGGGCCAACACATATATTGTTAGAATCCCGTT
TAGGCCTAGTTTGGGTACTCTAGTATTAACCTCAATCCACTTATATTATGGTGGGCTGGAGTGT
AACTTAAACTAATTTATACCTCAATCCACTTCAACACATGTGGATTGAGTCCAATACTAGAGTA
TCCAAACAAAGCTTTAGGGTTCTCCCCGTGTAATTACTCTCTCACCCCTGTGTAATGGGCCAGA
CCTAGTTAACTCATGTCTATTAATACATTACCTAACCCCAAGATAGGGTTAGGGTTTCCCATAT
GGTATAGAGATAGGTTCATTTTCTTTTTTGTCCACCTCCCTCCCAACTGCCGGGCTTTTGACCT
GGTTTATTATGATCTCTGGACCTCCCCTGTACTTAGTATTTCTGGTTATAAATACTATTTGGTG
ATTTTGGATTATTTTTCCCATTTTCTTGGACTTTTTCTCATAGGTTGAAGTCCGACACGTTCCC
CACCATCACACACTTCTTCGCCTGGGTATCCACCCAGTTTCGTCGCCCGGTTCATGCACTGCAG
TGTGACAATGGCCGCGAGTTCGACAGCCACGCTTCCATTTCTTTCTTTCTCACCAGTGGCGTCC
AGTTGCGTCTCTCGTGCCCTACACCTCTGCCCAGGACGGTCGGGCCGAACGCATGATTCACACC
ACCACTAATATGATTTGCTGCCTTCTCTTCCAGGCTTCTCTCCCAACCAGCTACTGGGCAGAGG
CCCTGCACACCGCCACACACCTCCTCAACCGTCTTCCCTCGAAGGCGGTGCGCCACCCTACTCC
CCACTTCGTCCTGTACGACACATCCCCCTCATACGACCACCTTCGCGTGTTCGGTTGTATTTTC
TATCCTAACACTTCTGCCACCGCTCCCCATAAGCTATCTCCTCGCTCTACTCGCTGCATCTTCT
TTGGCTACTCCCCGGACCACAAGGGGTATCGATGTCTTGACCTTGCCTCACACTGCATCATCAT
CTCTTGTCACGTCGCCTTCGACGAAAATGTGTTTCCCCTTGTTGGCTTCTCCTCACCCACCGAT
CTCAACTCCCTACTTGAGTCTGATCCGGTTACCCCTGCACCCCAGGCGCCCCGCCTTGTGTCGT
TGCCTGTACCACGTGCGGCCTTGATGCCTCCACTCGCGCCTCCTCCACTCCTCCGGACACCTCC
ATGGCCCCACCTCCGCTCGCACCGCCATCGTCGACCCACACCGGAGTCGTGCTATGGAGGAGTA
CGTAGCCCTGCTGGCCAACAACACCTGGGGCCTGGTGTTGTGTCCACCAGGCACCAATGTGGTC
ACCGGCAAGTGGCTCTTTCGCCACAAGCTGACCTCGGACGGCTCCCTCGACCGCTACAAGACCC
ATTGGGTCCTTCGGGGCTTTACCCAGCGTCCCGGAGTGGACTATGATGAGACCTTCAGCCCTAT
CGTCAAGTTAGCCACCGTCTATGCCATCCTCTCCCTCGCCCTCTCTCGGGACTGGGCGATCCAT
CAACTCGACGTCAAGAATGCCTTCCTCCACGGCGCTCTGACGGAGACTGTCTACTGCAGCCAGC
CCACTGGCTTCGTCGATGCCGCTCGCCCAGATCTGGTCTGCCGGCTGAACCGCTCCCTATACGA
CCTCAAGCAGGCGCTACGGGCATGGTACAGTTGCTTCGCTTCCTACTTGGCCTCCATCAGCTTC
GTCGAGGCCATGTCAGACACGCCACTCTTCATCTACCGGCGCGGCGACGACACCGTCGACGATA
TTGTGCTCACGACATCCACACCCGACCTTCTATAGCGCACGATCATCGCCCTTCAGTGGGAGTT
CGCAATGAAGGACCTGAGGCCCCTCCACCATTTCCTCGGTATCACCGCCGAACGTCGGTCCTAG
GGTCTCTTCCTTCACCAGCGCCAGTACGTCATCGACATCCTGGAGCAGGCTGGAATGTCTGATT
GCAAGCCCTGCTCCACGCATGTCGACACTCTAGTGAAGCTCTCTGAGGACGACAGACCCCCGGT
CGCCGACGCGACGTCTTAACGGAGCCTAACCGGCGCGCTCTAGTACCTCACCTTCTCCATAACC
GACATTGCCTACGTCGTCCAGCAGGTGTGCTTGCATATGCACACCCCGCGGGAGCCCCATCTCA
CCGCTCTCAAGCGGATCCTGCGCTACCTCCTTGGCTCCCTCGACTACGGCCTCCTACTGCGACC
ATCCCCGACATCGGAGCTCGTGGTCTACACTGACGCTAACTGGGCCGGCTGTCGCGACATGCGC
CGGTCCACCTCCGGTTATGCCGTGTTCCTGGGCCACCAAGCGGCGGCCCGTCGTCTCCCACTCC
AGTGCAAAGGCCGAGTACCGCACTGTGGCCAACGACGTGTCAGAGGCCTCCTGGATGCGCCAGC
TATTACACGAGCTCCACAAGCCTCTTCCGCGCGCAACCCTCGTCTACTGTGACAACGTCAGCGC
GGTCTACCTCTCCACCAACCCCGTGCAGCATCAGTGCACGAAGCACGTGGAGATCGACCTGCAC
TTCGTCCGCGAGCGTGTCGCTGCCGATGACGTTCGGGTTCTCGGCGTCCCCACCACGCTGCAGT
CCACCGACATCTTCACCAAGGGGTTACCGTTGAGTGTATTTTTAGACTTTCGATCCAGTCTCAA
CATCTGTACAGGATAGAGTTGCGACTGCGGGGTGTTAGAATCCCGTTTAGGGTTTAGGGTTCTC
CCCATGTAATTACTCTCTCACCCCTGTGTAATGGGTCAGACCCAGTTAACTCATGTCTATTAAT
ACATGACCCAACCCCAAGATAGGGTTAGGGTTTCCCACATATATAACTACAGTTGTAATGTTAA
TAAATAGAATAGGTGTATATATACAATATACAATAGTCATAACAACTAATACATATATGCACTA
AGTACATAATAAATTTTAACTTATTATAAAAATAACTCTTTTATTTTAGCTATTGATATAAAGG
TACAAGGAAAATTTCCTTTTTGTTAGGGGGGGGGGGCATGGCCCCTGCCAGCCCCCCTTGTCTA
CGCCACGGATGAAAGTGGTAATCCGAACTGTTAGAACAAATTTAATATTTAAAAATATATACGT
ATAAAATTTGATGTTGATCTTTTCTTATGTTATCAAGCACATTAGTATAAATATGAATAAAATA
TTACATAAATAGTTTTATGTATTATTTGCTCTCTACAACACAAAAAGTTGAAAAAAATACCGAG
TTTGTTTCCGAATCCATACCGAAGTTTATATCTATTATTTAAGAAAATATATGATGAATTTGAG
ATTTACCTTTTATGAATCTTAACAAGCTGGATGTTAAAAACAAGAATACAAATTTGTATTGTAT
ATTCTATATCCTATTTATTCGCAATCAAAGAAAAACGACTAAAAAACTGATTACCGAATAAATA
CCGTTTCCGACCGTTTTCATCCCTCGCCACTGCTTGCTATACAGATGCTGC
Conservation Information
Conserved circRNAs NA
PMCS 0.046591787
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to drought stress
Other Information
References Han et al., 2020;Zhang et al., 2019