Plant Circular RNA Database

Detail information of Os06g0645400_circ_g.6

			
						 General Information
					
						CircRNA Name
						Os06g0645400_circ_g.6
					
						ID in PlantcircBase
						osa_circ_031732
					
						Alias
						Os_ciR10517
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr6: 26336412-26338166  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os06g0645400						
					
						Parent gene annotation
						
							Similar to Isoleucine-tRNA ligase-like protein. (Os06t0645400-01
);Similar to ATP binding protein (Fragment). (Os06t0645400-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os06g0645400_circ_g.5 Os06g0645400_circ_g.7 Os06g0645400_circ_g.8 Os06g0645400_circ_g.9 Os06g0645400_circ_g.10 						
					
						Support reads
						2/1
					
						Tissues
						root/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os06t0645400-01:4

General Information
CircRNA Name	Os06g0645400_circ_g.6
ID in PlantcircBase	osa_circ_031732
Alias	Os_ciR10517
Organism	Oryza sativa
Position	chr6: 26336412-26338166 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os06g0645400
Parent gene annotation	Similar to Isoleucine-tRNA ligase-like protein. (Os06t0645400-01 );Similar to ATP binding protein (Fragment). (Os06t0645400-02)
Parent gene strand	+
Alternative splicing	Os06g0645400_circ_g.5 Os06g0645400_circ_g.7 Os06g0645400_circ_g.8 Os06g0645400_circ_g.9 Os06g0645400_circ_g.10
Support reads	2/1
Tissues	root/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os06t0645400-01:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ATTCTGGGGGACTCCACTACCGCTGTGGATCAGCCAAGATGGTGAAGAAATTGTTGTTATGGAT
TCCATTGAGAAACTTGAACGGTTATCTGGTGTCAAGgccagtgggcttgttgtcgccgttgatg
atgatggctgcttcattgaaaagatatctgagttcagtgggcgatatgtcaaagaggctgacag
ggatatca

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GCCAGTGGGCTTGTTGTCGCCGTTGATGATGATGGCTGCTTCATTGAAAAGATATCTGAGTTCA
GTGGGCGATATGTCAAAGAGGCTGACAGGGATATCATCAACTCTGTTAAGGTAAGCTGTTGTTT
CAGTATTCCTTGGACCATTTACTGTATGTAACACATTTACATTTTAGTTGCCTACTTGTTTATG
TGGACTATTATCTATAGATTTTGGATTTGATTAATAAATTAGTGCCGTAGGACATTGCATTATA
TAGATTCTCATGCTAGTATGTACCGGAATAATGTCAGGACCTGTATGTGCATTTTATGCATTAT
CATGTTAATTGTCTGGATGACCTTGAAGTGGGTGCACACAAAAGGAAATCAGATGTATAGCATA
AAGTTTCTCAATGTATGTCTGCACTCTGTGGATTGCACCTTCGTAAATCATAACTCATAAGCAG
TTTTGGTTGATATTATAGCAGCATATTTATTGCATATGTTGGATAGTTTTATATCCCTGAGGAT
GTCATTCTGAAGATTATAAACTTTGTGAACAGGATAAAGGAAGACTTGTCAGTAAAGGGAGCAT
TGAACACTCTTATCCATTTTGCTGGCGCTCGGGCACTCCTCTTATTTACCGGGCTGTCCCAAGC
TGGTAAGCATCTACTGCTGCTACCATGCAAATTTGTTAGTCGGTGTCTTCTTTACCCTTTGAGT
TATATATAATTCTCTATCCATCTGGTTGTTTAGCACAAATGGTAATGCAGTCCATCTTATACTT
GTAACACATGTACATGATGTACCCTCCGCCCCAACATATAACAACTTCTAACATTCAAAATTTG
TCCCAAAATATAACAACTTTTGCACCTACATTATCTTTTTAAATCAATCACAACCTTCCACCTT
TTAATTTCTCCACCTACTTCCTTTTTTTCAACCAATCACAACCTTCTCTCCATTTAATTTCACC
TGCTTTCTTAATACCCGTGTACAACCCCAAAACTCATATTTTGGGACGGAGATAGTAGAAGTTA
CTTCAATTTAACTTCATCATGTTTTAATTCCATCTAGATGAACGAATGTGGCTTTCTTTTGAAT
CTTTGTGGTTCCTATTTGTTGGTTTTGTTCATCTGTCTTTTATGGTCATTGTTGTTTTCCTGTT
CCATTACCTGTTTTTATTTGAGAAATGTATGCCTGAAAGAGCTTTTCTGTAGGTTTGTGAAGGT
TGAAAAGATTAGGGACCAGTTGCTGGAATGTAACAAGCAGACCTATTGGGTTCCAGATTATGTT
AAGGTACTCTATCTTTTCTTGTTTGTCACACAAAGTAATTAGCTAATGCTCTATTACAAAATTG
GATAAGGTTTGCACTGGTTTTTGTTGCATATCACCTAGATTTGCCATCAATGACATTGATAGCT
TATTTTCTATGATAGTTCTGTTTCATGTCTTACCATTTATTGTTTGCAATATTTGCATCGAATG
TCTATAATTGAACTGGTAATATGAAACTTGCAGAGTTTACGTTAGCAGCTGTTGCGAGCGTTGA
GTTTACGTTATCAGCTGGTATATTTAACTTGATATATTTGTTAACAACAAATGTATGCAGGAAA
AGCGGTTCCATAATTGGCTAGAAGGTGCTAGGGATTGGGCTGTTAGCAGAAGTAGATTCTGGGG
GACTCCACTACCGCTGTGGATCAGCCAAGATGGTGAAGAAATTGTTGTTATGGATTCCATTGAG
AAACTTGAACGGTTATCTGGTGTCAAG
						
					

			
		

Sequences
Splice junction sequence	ATTCTGGGGGACTCCACTACCGCTGTGGATCAGCCAAGATGGTGAAGAAATTGTTGTTATGGAT TCCATTGAGAAACTTGAACGGTTATCTGGTGTCAAGgccagtgggcttgttgtcgccgttgatg atgatggctgcttcattgaaaagatatctgagttcagtgggcgatatgtcaaagaggctgacag ggatatca
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GCCAGTGGGCTTGTTGTCGCCGTTGATGATGATGGCTGCTTCATTGAAAAGATATCTGAGTTCA GTGGGCGATATGTCAAAGAGGCTGACAGGGATATCATCAACTCTGTTAAGGTAAGCTGTTGTTT CAGTATTCCTTGGACCATTTACTGTATGTAACACATTTACATTTTAGTTGCCTACTTGTTTATG TGGACTATTATCTATAGATTTTGGATTTGATTAATAAATTAGTGCCGTAGGACATTGCATTATA TAGATTCTCATGCTAGTATGTACCGGAATAATGTCAGGACCTGTATGTGCATTTTATGCATTAT CATGTTAATTGTCTGGATGACCTTGAAGTGGGTGCACACAAAAGGAAATCAGATGTATAGCATA AAGTTTCTCAATGTATGTCTGCACTCTGTGGATTGCACCTTCGTAAATCATAACTCATAAGCAG TTTTGGTTGATATTATAGCAGCATATTTATTGCATATGTTGGATAGTTTTATATCCCTGAGGAT GTCATTCTGAAGATTATAAACTTTGTGAACAGGATAAAGGAAGACTTGTCAGTAAAGGGAGCAT TGAACACTCTTATCCATTTTGCTGGCGCTCGGGCACTCCTCTTATTTACCGGGCTGTCCCAAGC TGGTAAGCATCTACTGCTGCTACCATGCAAATTTGTTAGTCGGTGTCTTCTTTACCCTTTGAGT TATATATAATTCTCTATCCATCTGGTTGTTTAGCACAAATGGTAATGCAGTCCATCTTATACTT GTAACACATGTACATGATGTACCCTCCGCCCCAACATATAACAACTTCTAACATTCAAAATTTG TCCCAAAATATAACAACTTTTGCACCTACATTATCTTTTTAAATCAATCACAACCTTCCACCTT TTAATTTCTCCACCTACTTCCTTTTTTTCAACCAATCACAACCTTCTCTCCATTTAATTTCACC TGCTTTCTTAATACCCGTGTACAACCCCAAAACTCATATTTTGGGACGGAGATAGTAGAAGTTA CTTCAATTTAACTTCATCATGTTTTAATTCCATCTAGATGAACGAATGTGGCTTTCTTTTGAAT CTTTGTGGTTCCTATTTGTTGGTTTTGTTCATCTGTCTTTTATGGTCATTGTTGTTTTCCTGTT CCATTACCTGTTTTTATTTGAGAAATGTATGCCTGAAAGAGCTTTTCTGTAGGTTTGTGAAGGT TGAAAAGATTAGGGACCAGTTGCTGGAATGTAACAAGCAGACCTATTGGGTTCCAGATTATGTT AAGGTACTCTATCTTTTCTTGTTTGTCACACAAAGTAATTAGCTAATGCTCTATTACAAAATTG GATAAGGTTTGCACTGGTTTTTGTTGCATATCACCTAGATTTGCCATCAATGACATTGATAGCT TATTTTCTATGATAGTTCTGTTTCATGTCTTACCATTTATTGTTTGCAATATTTGCATCGAATG TCTATAATTGAACTGGTAATATGAAACTTGCAGAGTTTACGTTAGCAGCTGTTGCGAGCGTTGA GTTTACGTTATCAGCTGGTATATTTAACTTGATATATTTGTTAACAACAAATGTATGCAGGAAA AGCGGTTCCATAATTGGCTAGAAGGTGCTAGGGATTGGGCTGTTAGCAGAAGTAGATTCTGGGG GACTCCACTACCGCTGTGGATCAGCCAAGATGGTGAAGAAATTGTTGTTATGGATTCCATTGAG AAACTTGAACGGTTATCTGGTGTCAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.120376467

Conservation Information
Conserved circRNAs	NA
PMCS	0.120376467

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							26338126-26338163(+)
26338106-26337620(+)
26338024-26338154(-)
26336989-26337687(-)
						
						Potential amino acid sequence
						
							MDSIEKLERLSGVKASGLVVAVDDDGCFIEKISEFSGRYVKEADRDIINSVKDKGRLVSKGSIE
HSYPFCWRSGTPLIYRAVPSWFVKVEKIRDQLLECNKQTYWVPDYVKEKRFHNWLEGARDWAVS
RSRFWGTPLPLWISQDGEEIVVMDSIEKLERLSGVKASGLVVAVDDDGCFIEKISEFSGRYVKE
ADRDIINSVKDKGRLVSKGSIEHSYPFCWRSGTPLIYRAVPSWFVKVEKIRDQLLECNKQTYWV
PDYVKEKRFHNWLEGARDWAVSRSRFWGTPLPLWISQDGEEIVVMDSIEKLERLSGVKASGLVV
AVDDDGCFIEKISEFSGRYVKEADRDIINSVKDKGRLVSKGSIEHSYPFCWRSGTPLIYRAVPS
WFVKVEKIRDQLLECNKQTYWVPDYVKEKRFHNWLEGARDWAVSRSRFWGTPLPLWISQDGEEI
VVMDSIEKLERLSGVK(+)
MVKKLLLWIPLRNLNGYLVSRPVGLLSPLMMMAASLKRYLSSVGDMSKRLTGISSTLLRIKEDL
SVKGALNTLIHFAGARALLLFTGLSQAGL*(+)
MEPLFLNIIWNPIGLLVTFQQLVPNLFNLHKPAWDSPVNKRSARAPAKWIRVFNAPFTDKSSFI
LNRVDDIPVSLFDISPTELRYLFNEAAIIINGDNKPTGLDTR*(-)
MLPLLTSLPLSLTELMISLSASLTYRPLNSDIFSMKQPSSSTATTSPLALTPDNRSSFSMESIT
TISSPSWLIHSGSGVPQNLLLLTAQSLAPSSQLWNRFSLT*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	26338126-26338163(+) 26338106-26337620(+) 26338024-26338154(-) 26336989-26337687(-)
Potential amino acid sequence	MDSIEKLERLSGVKASGLVVAVDDDGCFIEKISEFSGRYVKEADRDIINSVKDKGRLVSKGSIE HSYPFCWRSGTPLIYRAVPSWFVKVEKIRDQLLECNKQTYWVPDYVKEKRFHNWLEGARDWAVS RSRFWGTPLPLWISQDGEEIVVMDSIEKLERLSGVKASGLVVAVDDDGCFIEKISEFSGRYVKE ADRDIINSVKDKGRLVSKGSIEHSYPFCWRSGTPLIYRAVPSWFVKVEKIRDQLLECNKQTYWV PDYVKEKRFHNWLEGARDWAVSRSRFWGTPLPLWISQDGEEIVVMDSIEKLERLSGVKASGLVV AVDDDGCFIEKISEFSGRYVKEADRDIINSVKDKGRLVSKGSIEHSYPFCWRSGTPLIYRAVPS WFVKVEKIRDQLLECNKQTYWVPDYVKEKRFHNWLEGARDWAVSRSRFWGTPLPLWISQDGEEI VVMDSIEKLERLSGVK(+) MVKKLLLWIPLRNLNGYLVSRPVGLLSPLMMMAASLKRYLSSVGDMSKRLTGISSTLLRIKEDL SVKGALNTLIHFAGARALLLFTGLSQAGL(+) MEPLFLNIIWNPIGLLVTFQQLVPNLFNLHKPAWDSPVNKRSARAPAKWIRVFNAPFTDKSSFI LNRVDDIPVSLFDISPTELRYLFNEAAIIINGDNKPTGLDTR(-) MLPLLTSLPLSLTELMISLSASLTYRPLNSDIFSMKQPSSSTATTSPLALTPDNRSSFSMESIT TISSPSWLIHSGSGVPQNLLLLTAQSLAPSSQLWNRFSLT*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os06g0645400_circ_g.6

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