Detail information of AT2G31660_circ_g.5


General Information
CircRNA Name AT2G31660_circ_g.5
ID in PlantcircBase ath_circ_015926
Alias Ath_circ_FC1433
Organism Arabidpsis thaliana
Position chr2: 13464919-13469218  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT2G31660
Parent gene annotation Importin beta-like SAD2
Parent gene strand +
Alternative splicing AT2G31660_circ_g.2 AT2G31660_circ_g.3 AT2G31660_circ_g.4 AT2G31660_circ_g.6 AT2G31660_circ_g.7 AT2G31660_circ_g.8 AT2G31660_circ_g.9 AT2G31660_circ_g.10 AT2G31660_circ_g.11 AT2G31660_circ_g.12 AT2G31660_circ_g.13 AT2G31660_circ_g.14
Support reads 2
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G31660.1:14
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACATGACCTTTTATTCACCTAGCATTTCCTTGGATATATGGAGTCTCTGGCCTTTAATGGTGG
AAGCATTGGTTGATTGGGGAATCGATTTCTTTCCAAttggagcacacgccccagcatttggtga
ggttattgcagatagccgtggatggaaattgtgacatggcagtgcgtcaaattgctagtattca
gttcaaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGGAGCACACGCCCCAGCATTTGGTGAGGTTATTGCAGATAGCCGTGGATGGAAATTGTGACA
TGGCAGTGCGTCAAATTGCTAGTATTCAGTTCAAAAATTTAATTGCTAAGAACTGGTCACCTGA
GGATTGTGGTAATAATTTTGTATTCTAATTATCTTGTCTCGGCTTAGCGTTTGGAAGATCTTTA
GATTAATTTGCATATTTGATGGTGCAGGTCCTGCAGTAAGGCAGCAGCAGATATTTGAGAGTGA
CAAAGAATTGGTGAGGGACAATATTCTCGTCTATGTCACCCAAGTTCCAACCTTACTCAGGTAA
ATTTGCCAGATAGCTTTTGGAATTATCATTCAAGTCATTTGGTTTGCTGAACTCTGTCTGACGT
GGTCTGATTTTAAGCGATTTTATGAAAATATTTGTAACCTGTATGGCTAATCATGCCTACAAAT
TGCTCATCATCTTGTCTGATAGATTGTCTTCAAGCTGATAGTCCTCTTCTTTTATATATACATC
TTTGAATGTGTCTCTACATTATCCTTAGGTTCTAGATATTAAAAAACGGCAGATAGAAGATGAT
TTTTTTTTAAGTTAGTATTTTTTTCTCATTACCTTGGTCCCAATAGCATCTTCTATAAGCCTCA
ACAACAACCATAATTTTTTTTTCCCCTAATTTTCTTATCCAGATCACAACTTGGAGAGTCTCTC
AAGACAATTATTTATGCTGACTACCCAGAACAATGGCCACGTCTTCTGGATTGGGTGAAGTACA
ACTTGCAAAATCAACAAATTTATGGGGCTTTGTTTGTGTTGCGGATACTCTCTAGAAAATATGA
GTAAGTTCACCACTTTCTGTTCCGTATCCCTATGTCTGTGTGTATGATTTAAAGGTTTGTTAGT
GAAATTTTTGATATGCGTTATTGAGACATCTTCAAGATTATCTTTGGTGGCAATAGCGCAATTT
CGAGTCTTGCATGTATCACACTGAGTAGTGACTAATAAAATTAGGTGGTAACCGATAATATTAA
GAGAAGGGAAAGAAGTGTTAGGCAGGAGAAATGAGAGTGTTTAAAACGTATTGTTAGAACACAA
TGGTTTTCGTGTCTCTGTCAATTCATGATGTCCTGTCAAGTATGTGACGACTTCCAGCTAGAAA
TGCAAGTTGCTCTTTATATGATGACACCTAAGTAGTATATCCCGTTGATGATGTTTCATGATTT
TATTTTCTAGGTTCAAGTCAGATGAGGAGAGGACACCGGTTTCCCGCATTGTGGAGGAGACATT
TCCTCAACTTTTGACTATTTTTAATGGGCTTATCCAGATACCAAATCCGTCTCTGGAGATAGCA
GAACTTATGAAGTTGATATGCAAAATATTTTGGTCATCCATATATGTAAGTTGCTAGAGAGATC
AGTTACATATGCCTCTGCGGAATTTCACATTTTATCTTTCTTAACATAATATGCATATCCTTAA
AACACAATTCAAACCAGTTAAGCTGTTTAATGTCTTTTTTACTGTTCTCTGTGGGCAGCTGGAG
CTTCCAAGGCAATTATTTGATCTAAACGTCTTTAATGCCTGGATGGTTCTGTTCTTGAGTGTTT
CGGAACGTCCTGTTCCAGTTGAAGGTCAGCCTATGGATCCGGAACTTAGAAAATCTTGGGGCTG
GTGGAAGGTCAAGAAGTGGACAGTGCACATTTTAAACAGGCTCTATAGTCGGTATGTCTTTGAC
ATTAATATTTTTTTAACAAGAAAGTACGCTTGAAAGGTTTATAGAATATTCTTTAACAGGTTTG
GAGATCCAAAACTTCAAAGTCCAGAAAACAAACCTTTCGCCCAAATGTTTCAAAAGAATTATGC
AGGCAGAATTTTGGAAGGCCACCTAAATTTCTTGAACACAATTCGTGTTGGAGGCTATCTTCCT
GACAGAGTTATCAATCTTCTCCTTCAGTACTTAAGCAACAGGTTTGTGTTACAATCACTTGTAG
ACATTAGTTTCATGTACATACATGTACACATTCAGTATCCCCACTTGGCTAACTTAAGTATCAT
CTTTTCTCTGACATTATAAAATTTTTTTTTGGTCACTGAATTTTAAGTTCTTGGAATTAATTAG
AAAACTCTTAGAGGTTTAGATGTTTTGTAAAAAAAAATTCGTTGAAACTAATTCGTTGTTTCTG
CAGCATTTCGAAGAATAGCATGTACAAGTTGCTTCTGCCTCGGCTGGATGTTCTGCTTTTTGAG
ATTGTTTTCCCTCTAATGTGCTTTAATGATAATGATCAAAAGCTTTGGGAGGAAGACCCTCATG
AATATGTGAGGAAAGGTTACAGTAAGTACTACATAATAATGACTTTCTTAAAAAGTCTTAATTC
TTAAAATCATCATTTGTAATGTTATTTGTTGTGCTGTAGATATCATTGAAGACTTGTACAGTCC
GCGAACAGCGTCCATGGATTTTGTAAATGAGTTGGTTCGAAAACGTGGGAAAGAAAACCTTCCG
AAGTTTGTTAAGTTTGTCGTTGAGATCTTCTTGAGGTATTACATTTGAGCTCTTCTGCTTGGAA
CTTTTCATATCAGTTGTGTTTTATTGACAACTTGTTTGTCCACTGTTTGTAGTTATGAAAAAGC
TACTGTAGAGGAGAAGCCTTATCGCCAAAAAGATGGTGCGATGCTGGCTGTTGGAGCTCTTTGT
GACAAATTGAAGCAAACGGATCCCTATAAATCTCAACTAGAGCTAATGTTGGTGCAACATATTT
TTCCTGATTTCAATAGTCCAGTTGGACATCTTAGAGCAAAGGTATTTTTGGCTTTAATCTGTGT
TGTGGATATCTCAGTAATCCATTGTTACTAGCTTACCGGAATGAGGATTTTGTTTTGCATTTCC
ACGAAGTCTGTTGTACTTCAATTTATTCTAGAACGCTTAGCATTGTTGCTTAGTTGGCTACTGC
ATTGCTGTCGATAGTTTAGTATAGACTTCCCGTTGTTACCCAGTATTTGATGTCATATTCTTTG
TGATCTCCTTTGATCTGTTTGACGGTTGCATTTTTTTGGATGTAGGCTGCATGGGTAGCTGGGC
AATATGCACACATCAATTTCTCAGATCAGAACAACTTTCGTAAAGCATTGCACAGTGTTGTTTC
GGGACTGCGCGATCCTGATCTCCCTGTTCGTGTTGATTCAGTTTTTGCATTGCGTTCATTTGTT
GAGGCGTGCAAGGGTATGTGATTTCCGCCTACGCATTTTTATATGCGTGAATGTGTTTGCACTT
GTTTACCTGTGTGTTGGCTTTTTGATTGTGTGCTGGGTTAATGTTGTGGCTAATTAAAACTTTC
TGGTCAAATGCAGATTTAAATGAGATACGTCCAATCCTCCCTCAGTTACTTGATGGTGGGTTAC
TCTTCTTTATGAATACTAGATGGTCAGTATTGTTGAAGTAAACTAACGCTTCAAACTTATTGTG
ATCCTGCGTCCATCAGAATTTTTCAAACTCATGAATGAGGTAGAGAATGAGGACCTTGTTTTTA
CTTTGGAGACCATCGTAGATAAGTTTGGCGAAGAGATGGCTCCTTTTGCTTTTGGATTATGTCA
AAATCTGGTAAGAAAAATTGGTTCTCTGAGTTGATATTTCTTGAATACTCAAACTTGGTAATAA
ATATGTATTTCTGCCTTTGCTTTTGTTCAGGCGGCTGCGTTTTGGAGATGTCTAAACACGTCAG
AAGCCAATGACGACTCTGATGACATGGGAGCTTTAGCTGCCGTTGGTTGTTTGCGTGCCATAAG
TACAATCCTTGAATCTGTTAGCAGTCTCCCGCAGCTGTTTGTTGAGATAGAACCAACTATACTT
CCAATAATGCAGAAAATGTTGACCACTGATGGCCAAGGTATACTCATATAGTTTTGGGATATAG
TTTGTAGACTCCGAGTATAATTAAGTTATAGTTGTGTCCAGAGGATGTACATTTGGACTGATTT
GGTAGCCAACTAGCCATTTGGGTCCATTACATTAGTATGGTTTTTTTTTTCAGAATTGTATAAT
CCATTTTTTTGTTCTGTCAGCCTTGTGTTGTGTTGTAGCATCACGATCTTAAGTTTATTAATTT
CCTTTTCTAGCTATTTCTATTTAATAATTGACACTGAAGCATCTATATTCTCATCCTATTTGCT
ATTGGCAGAGGTATTTGAAGAAGTTTTGGAGATTGCATCATACATGACCTTTTATTCACCTAGC
ATTTCCTTGGATATATGGAGTCTCTGGCCTTTAATGGTGGAAGCATTGGTTGATTGGGGAATCG
ATTTCTTTCCAA
Conservation Information
Conserved circRNAs NA
PMCS 0.121308936
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a