Plant Circular RNA Database

Detail information of Os07g0201100_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os07g0201100_circ_g.2
					
						ID in PlantcircBase
						osa_circ_033130
					
						Alias
						Os_ciR11276
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 5454727-5456611  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os07g0201100						
					
						Parent gene annotation
						
							Similar to Coatomer gamma subunit (Gamma-coat protein) (Gamma-CO
P). (Os07t0201100-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os07g0201100_circ_g.1 Os07g0201100_circ_g.3 						
					
						Support reads
						2/2
					
						Tissues
						root/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0201100-01:4

General Information
CircRNA Name	Os07g0201100_circ_g.2
ID in PlantcircBase	osa_circ_033130
Alias	Os_ciR11276
Organism	Oryza sativa
Position	chr7: 5454727-5456611 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os07g0201100
Parent gene annotation	Similar to Coatomer gamma subunit (Gamma-coat protein) (Gamma-CO P). (Os07t0201100-01)
Parent gene strand	+
Alternative splicing	Os07g0201100_circ_g.1 Os07g0201100_circ_g.3
Support reads	2/2
Tissues	root/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0201100-01:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TATCATACTCATTAGAGATATTCCTGATGCAAAAGAAAGTGGTTTATTTCACTTGTGTGAATTC
ATTGAAGATTGTGAGTTCACTTATATGTCTACTCAGattaggcaaaatgaccggttggctgtca
gcaagcttgtcactagtctaactaggggttctgttcgctcacctctggcacagtgcctacttat
tcggtaca

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 765
Transcript exons: 5454727-5454834,5454901-5455134,5456098-5456348,5456440-
5456611
ATTAGGCAAAATGACCGGTTGGCTGTCAGCAAGCTTGTCACTAGTCTAACTAGGGGTTCTGTTC
GCTCACCTCTGGCACAGTGCCTACTTATTCGGTACACTAGCCAGGTGATTAGAGAGTCAAGCAT
GAATAGTCAAGGTGGAGATCGCCCTTTCTTTGATTTCCTGGAGTCATGTCTCCGGAATAAAGCA
GAAATGGTCATACTTGAGGCTGCAAGAGCGATAACTGAATTAAATGGCGTCACCAGCCGGGAGC
TTACACCTGCAATTACCGTGCTGCAATTGTTCTTAAGTTCATCGAAACCTGTTCTCAGATTTGC
TGCTGTTCGAACACTTAATAAGGTTGCATCAACTCATCCTTTGGCTGTCACCAATTGTAACATA
GATATGGAGAGTTTAATATCTGATCAGAACAGGAGCATTGCTACCCTTGCAATTACAACACTAC
TTAAGACAGGCAATGAATCAAGTGTTGATCGCTTAATGAAGCAGATGACCAATTTTATGTCGGA
CATTGCCGATGAATTCAAGATTGTTGTCGTAGAGGCCATAAGATCCTTGTGCTTGAAGTTCCCC
CTAAAATATCGGTCACTGATGAACTTTTTGAGTAATATCCTACGGGAAGAGGGTGGCTTTGAGT
ACAAGAAGGCTATTGTTGATTCAATTATCATACTCATTAGAGATATTCCTGATGCAAAAGAAAG
TGGTTTATTTCACTTGTGTGAATTCATTGAAGATTGTGAGTTCACTTATATGTCTACTCAG
						
					

						Genomic sequence
						
							ATTAGGCAAAATGACCGGTTGGCTGTCAGCAAGCTTGTCACTAGTCTAACTAGGGGTTCTGTTC
GCTCACCTCTGGCACAGTGCCTACTTATTCGGTACACTAGCCAGGTAATGTTTTTTGATTCTGC
AAAACTTTATTTGGATAGATATCTGATACATGAGTGCCATCCATAGGTGATTAGAGAGTCAAGC
ATGAATAGTCAAGGTGGAGATCGCCCTTTCTTTGATTTCCTGGAGTCATGTCTCCGGAATAAAG
CAGAAATGGTCATACTTGAGGCTGCAAGAGCGATAACTGAATTAAATGGCGTCACCAGCCGGGA
GCTTACACCTGCAATTACCGTGCTGCAATTGTTCTTAAGTTCATCGAAACCTGTTCTCAGATTT
GCTGCTGTTCGAACACTTAATAAGGTTTGTTTTATCCATAAGACTACTTTTTGTACTTTCTTGT
CATTGTACTTCTGTCATGTGTGTGGAGCTTTGATTCAACTGTAGTTTACAAATACAAAGTAGAT
GGCTTCCCACAAATAGTTTTCTTTCTACCACACCAGTGATTGGCAAGCAATATTATATCCATTT
TTTACACATTGGTACTTATCTCGAATTGGCATTAAGTCTGCATATTTTCCCCTATTATAAATGC
TAAAAGTCCAAAACTGTCACTGTTTTTTATGAACAATGAAATAACACTGGTTAGTTTCTGACCA
CAACATTGCCCTTGATTGCCTAGTTTGGAGAACCAGATTCTGCTGGCTGTTGGCCAGAAATAAA
CTGTATTAGTGCCTTGTCCAGTCTGGTCACATGCATAGAATGTGTGCATGTAGACCGACATGAA
TTGGTTAATTTACACTGAACCATCATCTGGGACCGATAGGGCCAACTGCTCTTGGAAGACACGA
AAAGTCGAAAACTATCTATAGTGGTGTGGGGGATTGATCTCAAGACATAGGGACAACAGCAAGA
GGGAACTAACTGGAAAAAAAAACAATTAGATTTAATCCTAGTTATCCTCTATATAACTTGTGAA
TTTTATTTTATATATTTTGATGAGCTTGTGGGTGGGTTGTGAACTGATGGTCCAACTGGTAAAC
CACTGATTCAAAATGTTCACTGGTTTTATCAGTAGTCCGATTTTATAACTATGCTTGGATATAA
TTTGAATTTGTCGAGTATAGTTTAGTTGGAAGTTGAAACTTCTGCCTCTTGCAAATTTAATCAG
GAAAAATTATATTCATTACTATGTTAATTCTTTTGTTTATGTTCTTTTTTATGGAGTTCCTCTT
TTGATTATATTAAACTGTATGCTTATACTATGTTTGATAGGCTTGTTGGTTCCTTCACTTGACT
TGTGTTCATTTGATATTGATTGTACAGGTTGCATCAACTCATCCTTTGGCTGTCACCAATTGTA
ACATAGATATGGAGAGTTTAATATCTGATCAGAACAGGAGCATTGCTACCCTTGCAATTACAAC
ACTACTTAAGACAGGCAATGAATCAAGTGTTGATCGCTTAATGAAGCAGATGACCAATTTTATG
TCGGACATTGCCGATGAATTCAAGATTGTTGTCGTAGAGGCCATAAGATCCTTGTGCTTGAAGT
TCCCCCTAAAATATCGGTCACTGTACGTAGAATAGCGTATATTCTTATACAGAAATTTTTAAAG
ATCCAGAACTAGCTTGTCATCAGAACATTGAACTTTGTTGTGTTTGCAGGATGAACTTTTTGAG
TAATATCCTACGGGAAGAGGGTGGCTTTGAGTACAAGAAGGCTATTGTTGATTCAATTATCATA
CTCATTAGAGATATTCCTGATGCAAAAGAAAGTGGTTTATTTCACTTGTGTGAATTCATTGAAG
ATTGTGAGTTCACTTATATGTCTACTCAG
						
					

			
		

Sequences
Splice junction sequence	TATCATACTCATTAGAGATATTCCTGATGCAAAAGAAAGTGGTTTATTTCACTTGTGTGAATTC ATTGAAGATTGTGAGTTCACTTATATGTCTACTCAGattaggcaaaatgaccggttggctgtca gcaagcttgtcactagtctaactaggggttctgttcgctcacctctggcacagtgcctacttat tcggtaca
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 765 Transcript exons: 5454727-5454834,5454901-5455134,5456098-5456348,5456440- 5456611 ATTAGGCAAAATGACCGGTTGGCTGTCAGCAAGCTTGTCACTAGTCTAACTAGGGGTTCTGTTC GCTCACCTCTGGCACAGTGCCTACTTATTCGGTACACTAGCCAGGTGATTAGAGAGTCAAGCAT GAATAGTCAAGGTGGAGATCGCCCTTTCTTTGATTTCCTGGAGTCATGTCTCCGGAATAAAGCA GAAATGGTCATACTTGAGGCTGCAAGAGCGATAACTGAATTAAATGGCGTCACCAGCCGGGAGC TTACACCTGCAATTACCGTGCTGCAATTGTTCTTAAGTTCATCGAAACCTGTTCTCAGATTTGC TGCTGTTCGAACACTTAATAAGGTTGCATCAACTCATCCTTTGGCTGTCACCAATTGTAACATA GATATGGAGAGTTTAATATCTGATCAGAACAGGAGCATTGCTACCCTTGCAATTACAACACTAC TTAAGACAGGCAATGAATCAAGTGTTGATCGCTTAATGAAGCAGATGACCAATTTTATGTCGGA CATTGCCGATGAATTCAAGATTGTTGTCGTAGAGGCCATAAGATCCTTGTGCTTGAAGTTCCCC CTAAAATATCGGTCACTGATGAACTTTTTGAGTAATATCCTACGGGAAGAGGGTGGCTTTGAGT ACAAGAAGGCTATTGTTGATTCAATTATCATACTCATTAGAGATATTCCTGATGCAAAAGAAAG TGGTTTATTTCACTTGTGTGAATTCATTGAAGATTGTGAGTTCACTTATATGTCTACTCAG
Genomic sequence	ATTAGGCAAAATGACCGGTTGGCTGTCAGCAAGCTTGTCACTAGTCTAACTAGGGGTTCTGTTC GCTCACCTCTGGCACAGTGCCTACTTATTCGGTACACTAGCCAGGTAATGTTTTTTGATTCTGC AAAACTTTATTTGGATAGATATCTGATACATGAGTGCCATCCATAGGTGATTAGAGAGTCAAGC ATGAATAGTCAAGGTGGAGATCGCCCTTTCTTTGATTTCCTGGAGTCATGTCTCCGGAATAAAG CAGAAATGGTCATACTTGAGGCTGCAAGAGCGATAACTGAATTAAATGGCGTCACCAGCCGGGA GCTTACACCTGCAATTACCGTGCTGCAATTGTTCTTAAGTTCATCGAAACCTGTTCTCAGATTT GCTGCTGTTCGAACACTTAATAAGGTTTGTTTTATCCATAAGACTACTTTTTGTACTTTCTTGT CATTGTACTTCTGTCATGTGTGTGGAGCTTTGATTCAACTGTAGTTTACAAATACAAAGTAGAT GGCTTCCCACAAATAGTTTTCTTTCTACCACACCAGTGATTGGCAAGCAATATTATATCCATTT TTTACACATTGGTACTTATCTCGAATTGGCATTAAGTCTGCATATTTTCCCCTATTATAAATGC TAAAAGTCCAAAACTGTCACTGTTTTTTATGAACAATGAAATAACACTGGTTAGTTTCTGACCA CAACATTGCCCTTGATTGCCTAGTTTGGAGAACCAGATTCTGCTGGCTGTTGGCCAGAAATAAA CTGTATTAGTGCCTTGTCCAGTCTGGTCACATGCATAGAATGTGTGCATGTAGACCGACATGAA TTGGTTAATTTACACTGAACCATCATCTGGGACCGATAGGGCCAACTGCTCTTGGAAGACACGA AAAGTCGAAAACTATCTATAGTGGTGTGGGGGATTGATCTCAAGACATAGGGACAACAGCAAGA GGGAACTAACTGGAAAAAAAAACAATTAGATTTAATCCTAGTTATCCTCTATATAACTTGTGAA TTTTATTTTATATATTTTGATGAGCTTGTGGGTGGGTTGTGAACTGATGGTCCAACTGGTAAAC CACTGATTCAAAATGTTCACTGGTTTTATCAGTAGTCCGATTTTATAACTATGCTTGGATATAA TTTGAATTTGTCGAGTATAGTTTAGTTGGAAGTTGAAACTTCTGCCTCTTGCAAATTTAATCAG GAAAAATTATATTCATTACTATGTTAATTCTTTTGTTTATGTTCTTTTTTATGGAGTTCCTCTT TTGATTATATTAAACTGTATGCTTATACTATGTTTGATAGGCTTGTTGGTTCCTTCACTTGACT TGTGTTCATTTGATATTGATTGTACAGGTTGCATCAACTCATCCTTTGGCTGTCACCAATTGTA ACATAGATATGGAGAGTTTAATATCTGATCAGAACAGGAGCATTGCTACCCTTGCAATTACAAC ACTACTTAAGACAGGCAATGAATCAAGTGTTGATCGCTTAATGAAGCAGATGACCAATTTTATG TCGGACATTGCCGATGAATTCAAGATTGTTGTCGTAGAGGCCATAAGATCCTTGTGCTTGAAGT TCCCCCTAAAATATCGGTCACTGTACGTAGAATAGCGTATATTCTTATACAGAAATTTTTAAAG ATCCAGAACTAGCTTGTCATCAGAACATTGAACTTTGTTGTGTTTGCAGGATGAACTTTTTGAG TAATATCCTACGGGAAGAGGGTGGCTTTGAGTACAAGAAGGCTATTGTTGATTCAATTATCATA CTCATTAGAGATATTCCTGATGCAAAAGAAAGTGGTTTATTTCACTTGTGTGAATTCATTGAAG ATTGTGAGTTCACTTATATGTCTACTCAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.395948252

Conservation Information
Conserved circRNAs	NA
PMCS	0.395948252

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							5454920-5456608(+)
5456539-5454772(+)
5454922-5456610(-)
						
						Potential amino acid sequence
						
							MNSQGGDRPFFDFLESCLRNKAEMVILEAARAITELNGVTSRELTPAITVLQLFLSSSKPVLRF
AAVRTLNKVASTHPLAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQMTNFMS
DIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIIILIRDIPDAKE
SGLFHLCEFIEDCEFTYMSTQIRQNDRLAVSKLVTSLTRGSVRSPLAQCLLIRYTSQVIRESSM
NSQGGDRPFFDFLESCLRNKAEMVILEAARAITELNGVTSRELTPAITVLQLFLSSSKPVLRFA
AVRTLNKVASTHPLAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQMTNFMSD
IADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIIILIRDIPDAKES
GLFHLCEFIEDCEFTYMSTQIRQNDRLAVSKLVTSLTRGSVRSPLAQCLLIRYTSQVIRESSMN
SQGGDRPFFDFLESCLRNKAEMVILEAARAITELNGVTSRELTPAITVLQLFLSSSKPVLRFAA
VRTLNKVASTHPLAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQMTNFMSDI
ADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIIILIRDIPDAKESG
LFHLCEFIEDCEFTYMSTQIRQNDRLAVSKLVTSLTRGSVRSPLAQCLLIRYTSQVIRESSMNS
QGGDRPFFDFLESCLRNKAEMVILEAARAITELNGVTSRELTPAITVLQLFLSSSKPVLRFAAV
RTLNKVASTHPLAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQMTNFMSDIA
DEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIIILIRDIPDAKESGL
FHLCEFIEDCEFTYMSTQ(+)
MQKKVVYFTCVNSLKIVSSLICLLRLGKMTGWLSASLSLV*(+)
MLDSLITWLVYRISRHCARGERTEPLVRLVTSLLTANRSFCLI*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	5454920-5456608(+) 5456539-5454772(+) 5454922-5456610(-)
Potential amino acid sequence	MNSQGGDRPFFDFLESCLRNKAEMVILEAARAITELNGVTSRELTPAITVLQLFLSSSKPVLRF AAVRTLNKVASTHPLAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQMTNFMS DIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIIILIRDIPDAKE SGLFHLCEFIEDCEFTYMSTQIRQNDRLAVSKLVTSLTRGSVRSPLAQCLLIRYTSQVIRESSM NSQGGDRPFFDFLESCLRNKAEMVILEAARAITELNGVTSRELTPAITVLQLFLSSSKPVLRFA AVRTLNKVASTHPLAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQMTNFMSD IADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIIILIRDIPDAKES GLFHLCEFIEDCEFTYMSTQIRQNDRLAVSKLVTSLTRGSVRSPLAQCLLIRYTSQVIRESSMN SQGGDRPFFDFLESCLRNKAEMVILEAARAITELNGVTSRELTPAITVLQLFLSSSKPVLRFAA VRTLNKVASTHPLAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQMTNFMSDI ADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIIILIRDIPDAKESG LFHLCEFIEDCEFTYMSTQIRQNDRLAVSKLVTSLTRGSVRSPLAQCLLIRYTSQVIRESSMNS QGGDRPFFDFLESCLRNKAEMVILEAARAITELNGVTSRELTPAITVLQLFLSSSKPVLRFAAV RTLNKVASTHPLAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQMTNFMSDIA DEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIIILIRDIPDAKESGL FHLCEFIEDCEFTYMSTQ(+) MQKKVVYFTCVNSLKIVSSLICLLRLGKMTGWLSASLSLV(+) MLDSLITWLVYRISRHCARGERTEPLVRLVTSLLTANRSFCLI(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os07g0201100_circ_g.2

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