Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d022542_circ_g.2 |
ID in PlantcircBase | zma_circ_009519 |
Alias | Zm07circ00105, zma_circ_0002624, GRMZM2G361847_C1 |
Organism | Zea mays |
Position | chr7: 179751928-179752290 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2, find_circ |
Parent gene | Zm00001d022542 |
Parent gene annotation |
Transcription factor TGA6 |
Parent gene strand | - |
Alternative splicing | Zm00001d022542_circ_g.1 |
Support reads | NA |
Tissues | leaf, endosperm, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d022542_T005:1 Zm00001d022542_T004:2 Zm00001d022542_T003:2 Zm00001d022542_T002:2 Zm00001d022542_T001:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.237527341 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
179751995-179752284(-) |
Potential amino acid sequence |
MADASSRTDTSIVLDDNDKNHRVI*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020; Ma et al., 2021b;Zhang et al., 2019 |