Detail information of AT5G23430_circ_g.4


General Information
CircRNA Name AT5G23430_circ_g.4
ID in PlantcircBase ath_circ_040020
Alias NA
Organism Arabidpsis thaliana
Position chr5: 7895284-7898313  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene AT5G23430
Parent gene annotation Katanin p80 WD40 repeat-containing subunit B1 homolog
Parent gene strand -
Alternative splicing AT5G23430_circ_g.2 AT5G23430_circ_g.3 AT5G23430_circ_g.5 AT5G23430_circ_g.6 AT5G23430_circ_g.7 AT5G23430_circ_g.8 AT5G23430_circ_g.9 AT5G23430_circ_g.10 AT5G23430_circ_g.11 AT5G23430_circ_g.12 AT5G23430_circ_g.13
Support reads 2
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT5G23430.3:9
AT5G23430.1:9
AT5G23430.2:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGCCAGTAGGAATTCATGAGGATGAAAATCTAGGCTTTGAATTTGCCCTTCATGACTCTTAAA
CTCGGTCAGCAGTTTTCCAGCTGTTAAATCCCAAACctgtaacttagccaaacgagactgcata
gagctgacaaattgattgtgctttcccattatgtcttcaacaatattttcttcagaaggagaat
cgatccct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTAACTTAGCCAAACGAGACTGCATAGAGCTGACAAATTGATTGTGCTTTCCCATTATGTCT
TCAACAATATTTTCTTCAGAAGGAGAATCGATCCCTTGTTCAACTGGCATATGGTTCCCTCTCT
GCTTGAACTATATGAAAGGAAATACAATATCTATTATCTCTGGATCTCAGAGGAACATGAGCAA
AAGCATGACTAGATGTGTAGTTGAAAATTACTAAATCACAAAATATTATGTCTATTAAGATGTT
ATGAAGGCAGTACCATTTGAAATTGTATAAATCAAATGCATTAATTTCCTCTTTGTCCGTAACT
TTCTAACTTTCCTCTTTTGTGGCAATTTACAGTCAGTGTGTTATTGCCTCAAGATCTCAAGTTG
AAAATAGTAAGGCTATTATACCATATTTGAAGGGCGGATGTTTGGAGCAGGCATATTTCCACTT
GAAAAATTTGAAACAGGACCCTCGAAGTTTGAAAATCTTCCTCTCCTCTCCCTATTTATGACGA
GTGACTGGAATCTTCCTGATATGATAAGACACATGAATGAGATTCGCTTCATTTGCAAAAGAAA
AGATGAAAGCTGGGCTGAAGAATCACCTCCTTTCTGACTTTCAGTGGGGCTTGGGTCTCTATTT
GATCTGTGGCTTACCAAGTCATCTGAAACAATGACTAAAGCTTAGAACTGAGAATATCATCTAT
CAAACTCAACACAGGTACGTCATAGCAACCAATAATCTTAAACACATGATTCTTTCCACTATTT
GCATGTTTCACTGGAGCAACTTCATAATATTAACCCTACAGGCCACATTTTAGGGGCCAAGGTA
GTGTAAGACTACCAGCTGACATTCATATTAGCACTGAAACAGGCAAATATTCAAAAGGACAAAA
ACATACAGTTTTCATCGTGGTTTCGTGGAGGTGACCCCATCCGTGACCTTGAATTACTCCTGCC
ATATCTCTTGTATCTAAAATCATTAATGCTTCGCTCAGTTGCACCCCGCATGCCAACCTTTCCA
CCAGGAAGTGTACCCCCATCTGGTATATTATTTGGTTCAACTGGCTGAGACTCAGACATTTCAA
GAACCGAAGCGTCTGGCAGATCAGGGTTATTTCTGCTGCTAGGTGACCTTCGGGAATCAGCCGC
CTGCAATGAATACGGCATGGTTCTTGCAATTATGTCAAGTTCTGCTCTGGATTCAGTAGCCTGC
TCTATTCTAGGGTCTGCTCTGGGGACAATCACCGGAGCAAAATCTGCTGCCTTATTGACAGGAT
TCGCCTTTGGGTTAGCTTTTGTAAAATTCCTCCTTGACGTTGCAGCATTAGAGACGGCTGTTGA
AACACCCGAAGTGGCTTTTGATACATTGGTCGAACTGACCCTATGAGGAGTGCCTGGTAAACTT
CCTGTGGCTTCAAACAGCAGACAAAACCAGAAATGGCATATCATTTAATCAGTGCTAAGATTAA
GTAAGAAGAAAAGAGAAAAATAATAGAAGCAAGCATACATGAAAACGTCCTTGACTCTTTAGAA
ACGTCTGAATTTTGAGAAACTGACAACCTCCCGAGAGGCTTTGATTCCTTCATCGAGGACTCTG
AATTTTGTGATGTTGATGACCTTCCAATGGACTTTGTTTCTTTTGTCGAAGGATCAGAGTTCTG
AGAAACAGATAATCTTCCTAGAGACTTTGTTTCCTTCAATAAAGGATCTACATTTTGGGAAACG
GACAGCTTCCCGAGAACTGTCTTTGAGTTATTATCATTGAGAACTACTGGATCTCTTCCTGAGC
AAGATCGTTTCTCTGGATGACCATTTGATTGCGCAGTGTCTCCAGCCATACATGGCTCAGTACG
CTGACCATGCATTTGAAAATGAGTTGGTTCGTAAAGATTACTACCAGCTACAATTAAACAAAAA
GAAAAAGATATGTAGGGAGAGAGGAATACCGAGAGATCTACAACCCACACGCCTACACAACTCT
GATTGTATGAGCAACCAAGAAGCTTTCCCTCGTGAACATTCATATCTGACAATCTTGACCATCC
AACATCCACTCCATCATGACATCTAATTGGCTCCCATGAGAAAATCTACGATTTGCACAGGATT
AAACCAAAGGAGTGAGGTAAGAAGAGTAGGAATGTGTATTTTGAAAGCAAATGAGTAAACATAA
GAACGAATCCTTCAAAAGATGAGTTGTTCAATTAACATATATCTAATTTAAGAATCTACATACT
GCATATCAAAGTATAGAAGAATTTACCTTGAGACTTTCTTGCAATCCACAAAGCACAGTCTTTC
CATCTGGATTGAAACTCAGGCAACGGACCCCGGCAGTCTAGCGAAAATGAGAATATTAAAGGTA
GAGGGAAAATAAAATGTCACCAATTTGACTTAGCGTAAAACAAGTTGTACCTCAGGTCCACCAG
AACCAATCAGCTCGAATGTTTCCAGATCCCAGAATTTTACAGTTCTATCAGCTGAACCTGTTAG
CACAGGCAAAAACAGAATGCTTCAAATATTTGTAATCACACTAATTTTACATATTCCATGTAAA
TATTTAGGTGAACGTTAACAGAGAGTGAGAGAAGTAGTCATTATTAAAACGTCGGCATTCTATT
GTTATCTACACAACACAGCACCATTCTGAAAATATCTATGTTACACACACCCTCAATAATATGA
CCAAAGAAATGAAAAATACTTTAGATGCATATTTACTTCCAGATCTCAAATCACAGAGCTAAAA
AGATAAGATGGCCACAAGAGTTTCAATTACATAAAAAGAAGATGACGCCATGACACAGGGATCT
ATATAACTGGTTGGGCTGGGCTGGTAACCGCAATACAGTTGTGATCAGACACTCTTAGCCTAGA
AGTTTTATTTTGTGTTGGTGTTAGAAATTTTTAAGAGTAATACAAACCTGTTGCCAGTAGGAAT
TCATGAGGATGAAAATCTAGGCTTTGAATTTGCCCTTCATGACTCTTAAACTCGGTCAGCAGTT
TTCCAGCTGTTAAATCCCAAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.125160306
Functional Information
Coding potential Y
Potential coding position 7897311-7895286(-)
Potential amino acid sequence MNVHEGKLLGCSYNQSCVGVWVVDLSRTEPCMAGDTAQSNGHPEKRSCSGRDPVVLNDNNSKTV
LGKLSVSQNVDPLLKETKSLGRLSVSQNSDPSTKETKSIGRSSTSQNSESSMKESKPLGRLSVS
QNSDVSKESRTFSSTGSLPGTPHRVSSTNVSKATSGVSTAVSNAATSRRNFTKANPKANPVNKA
ADFAPVIVPRADPRIEQATESRAELDIIARTMPYSLQAADSRRSPSSRNNPDLPDASVLEMSES
QPVEPNNIPDGGTLPGGKVGMRGATERSINDFRYKRYGRSNSRSRMGSPPRNHDENYDLVSHRS
NRDPSPTESQKGGRFQSLVINRERRGRFSNFEGPVSNFSSGNMPAPNIRPSNMFKQRGNHMPVE
QGIDSPSEENIVEDIMGKHNQFVSSMQSRLAKLQVWDLTAGKLLTEFKSHEGQIQSLDFHPHEF
LLATGSADRTVKFWDLETFELIGSGGPETAGVRCLSFNPDGKTVLCGLQESLKIFSWEPIRCHD
GVDVGWSRLSDMNVHEGKLLGCSYNQSCVGVWVVDLSRTEPCMAGDTAQSNGHPEKRSCSGRDP
VVLNDNNSKTVLGKLSVSQNVDPLLKETKSLGRLSVSQNSDPSTKETKSIGRSSTSQNSESSMK
ESKPLGRLSVSQNSDVSKESRTFSSTGSLPGTPHRVSSTNVSKATSGVSTAVSNAATSRRNFTK
ANPKANPVNKAADFAPVIVPRADPRIEQATESRAELDIIARTMPYSLQAADSRRSPSSRNNPDL
PDASVLEMSESQPVEPNNIPDGGTLPGGKVGMRGATERSINDFRYKRYGRSNSRSRMGSPPRNH
DENYDLVSHRSNRDPSPTESQKGGRFQSLVINRERRGRFSNFEGPVSNFSSGNMPAPNIRPSNM
FKQRGNHMPVEQGIDSPSEENIVEDIMGKHNQFVSSMQSRLAKLQVWDLTAGKLLTEFKSHEGQ
IQSLDFHPHEFLLATGSADRTVKFWDLETFELIGSGGPETAGVRCLSFNPDGKTVLCGLQESLK
IFSWEPIRCHDGVDVGWSRLSDMNVHEGKLLGCSYNQSCVGVWVVDLSRTEPCMAGDTAQSNGH
PEKRSCSGRDPVVLNDNNSKTVLGKLSVSQNVDPLLKETKSLGRLSVSQNSDPSTKETKSIGRS
STSQNSESSMKESKPLGRLSVSQNSDVSKESRTFSSTGSLPGTPHRVSSTNVSKATSGVSTAVS
NAATSRRNFTKANPKANPVNKAADFAPVIVPRADPRIEQATESRAELDIIARTMPYSLQAADSR
RSPSSRNNPDLPDASVLEMSESQPVEPNNIPDGGTLPGGKVGMRGATERSINDFRYKRYGRSNS
RSRMGSPPRNHDENYDLVSHRSNRDPSPTESQKGGRFQSLVINRERRGRFSNFEGPVSNFSSGN
MPAPNIRPSNMFKQRGNHMPVEQGIDSPSEENIVEDIMGKHNQFVSSMQSRLAKLQVWDLTAGK
LLTEFKSHEGQIQSLDFHPHEFLLATGSADRTVKFWDLETFELIGSGGPETAGVRCLSFNPDGK
TVLCGLQESLKIFSWEPIRCHDGVDVGWSRLSDMNVHEGKLLGCSYNQSCVGVWVVDLSRTEPC
MAGDTAQSNGHPEKRSCSGRDPVVLNDNNSKTVLGKLSVSQNVDPLLKETKSLGRLSVSQNSDP
STKETKSIGRSSTSQNSESSMKESKPLGRLSVSQNSDVSKESRTFSSTGSLPGTPHRVSSTNVS
KATSGVSTAVSNAATSRRNFTKANPKANPVNKAADFAPVIVPRADPRIEQATESRAELDIIART
MPYSLQAADSRRSPSSRNNPDLPDASVLEMSESQPVEPNNIPDGGTLPGGKVGMRGATERSIND
FRYKRYGRSNSRSRMGSPPRNHDENYDLVSHRSNRDPSPTESQKGGRFQSLVINRERRGRFSNF
EGPVSNFSSGNMPAPNIRPSNMFKQRGNHMPVEQGIDSPSEENIVEDIMGKHNQFVSSMQSRLA
KLQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017