Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT5G23430_circ_g.4 |
ID in PlantcircBase | ath_circ_040020 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr5: 7895284-7898313 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, KNIFE, PcircRNA_finder |
Parent gene | AT5G23430 |
Parent gene annotation |
Katanin p80 WD40 repeat-containing subunit B1 homolog |
Parent gene strand | - |
Alternative splicing | AT5G23430_circ_g.2 AT5G23430_circ_g.3 AT5G23430_circ_g.5 AT5G23430_circ_g.6 AT5G23430_circ_g.7 AT5G23430_circ_g.8 AT5G23430_circ_g.9 AT5G23430_circ_g.10 AT5G23430_circ_g.11 AT5G23430_circ_g.12 AT5G23430_circ_g.13 |
Support reads | 2 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT5G23430.3:9 AT5G23430.1:9 AT5G23430.2:9 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.125160306 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
7897311-7895286(-) |
Potential amino acid sequence |
MNVHEGKLLGCSYNQSCVGVWVVDLSRTEPCMAGDTAQSNGHPEKRSCSGRDPVVLNDNNSKTV LGKLSVSQNVDPLLKETKSLGRLSVSQNSDPSTKETKSIGRSSTSQNSESSMKESKPLGRLSVS QNSDVSKESRTFSSTGSLPGTPHRVSSTNVSKATSGVSTAVSNAATSRRNFTKANPKANPVNKA ADFAPVIVPRADPRIEQATESRAELDIIARTMPYSLQAADSRRSPSSRNNPDLPDASVLEMSES QPVEPNNIPDGGTLPGGKVGMRGATERSINDFRYKRYGRSNSRSRMGSPPRNHDENYDLVSHRS NRDPSPTESQKGGRFQSLVINRERRGRFSNFEGPVSNFSSGNMPAPNIRPSNMFKQRGNHMPVE QGIDSPSEENIVEDIMGKHNQFVSSMQSRLAKLQVWDLTAGKLLTEFKSHEGQIQSLDFHPHEF LLATGSADRTVKFWDLETFELIGSGGPETAGVRCLSFNPDGKTVLCGLQESLKIFSWEPIRCHD GVDVGWSRLSDMNVHEGKLLGCSYNQSCVGVWVVDLSRTEPCMAGDTAQSNGHPEKRSCSGRDP VVLNDNNSKTVLGKLSVSQNVDPLLKETKSLGRLSVSQNSDPSTKETKSIGRSSTSQNSESSMK ESKPLGRLSVSQNSDVSKESRTFSSTGSLPGTPHRVSSTNVSKATSGVSTAVSNAATSRRNFTK ANPKANPVNKAADFAPVIVPRADPRIEQATESRAELDIIARTMPYSLQAADSRRSPSSRNNPDL PDASVLEMSESQPVEPNNIPDGGTLPGGKVGMRGATERSINDFRYKRYGRSNSRSRMGSPPRNH DENYDLVSHRSNRDPSPTESQKGGRFQSLVINRERRGRFSNFEGPVSNFSSGNMPAPNIRPSNM FKQRGNHMPVEQGIDSPSEENIVEDIMGKHNQFVSSMQSRLAKLQVWDLTAGKLLTEFKSHEGQ IQSLDFHPHEFLLATGSADRTVKFWDLETFELIGSGGPETAGVRCLSFNPDGKTVLCGLQESLK IFSWEPIRCHDGVDVGWSRLSDMNVHEGKLLGCSYNQSCVGVWVVDLSRTEPCMAGDTAQSNGH PEKRSCSGRDPVVLNDNNSKTVLGKLSVSQNVDPLLKETKSLGRLSVSQNSDPSTKETKSIGRS STSQNSESSMKESKPLGRLSVSQNSDVSKESRTFSSTGSLPGTPHRVSSTNVSKATSGVSTAVS NAATSRRNFTKANPKANPVNKAADFAPVIVPRADPRIEQATESRAELDIIARTMPYSLQAADSR RSPSSRNNPDLPDASVLEMSESQPVEPNNIPDGGTLPGGKVGMRGATERSINDFRYKRYGRSNS RSRMGSPPRNHDENYDLVSHRSNRDPSPTESQKGGRFQSLVINRERRGRFSNFEGPVSNFSSGN MPAPNIRPSNMFKQRGNHMPVEQGIDSPSEENIVEDIMGKHNQFVSSMQSRLAKLQVWDLTAGK LLTEFKSHEGQIQSLDFHPHEFLLATGSADRTVKFWDLETFELIGSGGPETAGVRCLSFNPDGK TVLCGLQESLKIFSWEPIRCHDGVDVGWSRLSDMNVHEGKLLGCSYNQSCVGVWVVDLSRTEPC MAGDTAQSNGHPEKRSCSGRDPVVLNDNNSKTVLGKLSVSQNVDPLLKETKSLGRLSVSQNSDP STKETKSIGRSSTSQNSESSMKESKPLGRLSVSQNSDVSKESRTFSSTGSLPGTPHRVSSTNVS KATSGVSTAVSNAATSRRNFTKANPKANPVNKAADFAPVIVPRADPRIEQATESRAELDIIART MPYSLQAADSRRSPSSRNNPDLPDASVLEMSESQPVEPNNIPDGGTLPGGKVGMRGATERSIND FRYKRYGRSNSRSRMGSPPRNHDENYDLVSHRSNRDPSPTESQKGGRFQSLVINRERRGRFSNF EGPVSNFSSGNMPAPNIRPSNMFKQRGNHMPVEQGIDSPSEENIVEDIMGKHNQFVSSMQSRLA KLQ(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |