Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G23400_circ_g.4 |
ID in PlantcircBase | ath_circ_004054 |
Alias | At_ciR2334 |
Organism | Arabidpsis thaliana |
Position | chr1: 8313170-8313672 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, find_circ |
Parent gene | AT1G23400 |
Parent gene annotation |
CAF2 |
Parent gene strand | - |
Alternative splicing | AT1G23400_circ_g.1 AT1G23400_circ_g.2 AT1G23400_circ_g.3 AT1G23400_circ_g.5 |
Support reads | 3/3 |
Tissues | leaf/seedlings |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G23400.1:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.330835684 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
8313574-8313172(-) |
Potential amino acid sequence |
MLWKPAAPVYPKLIQEVPEGLTKEEAHEFRVKGKSLRPICKLSKNGVYVSLVKDVRDAFELSSL VKVDCPGLEPSDYKKIGAKLKEKTGGEIIHRVGGVVYLFRGRNYNYRTRPQYPLMLWKPAAPVY PKLIQEVPEGLTKEEAHEFRVKGKSLRPICKLSKNGVYVSLVKDVRDAFELSSLVKVDCPGLEP SDYKKIGAKLKEKTGGEIIHRVGGVVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEVPEG LTKEEAHEFRVKGKSLRPICKLSKNGVYVSLVKDVRDAFELSSLVKVDCPGLEPSDYKKIGAKL KEKTGGEIIHRVGGVVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEVPEGLTKEEAHEFR VKGKSLRPICKLSKNGVYVSLVKDVRDAFELSSLVKVDCPGLEPSDYKKIGAKLK(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Pan et al., 2017 |