Detail information of Os08g0100500_circ_g.5


General Information
CircRNA Name Os08g0100500_circ_g.5
ID in PlantcircBase osa_circ_035514
Alias Os08circ00041/Os_ciR571
Organism Oryza sativa
Position chr8: 43389-45716  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRI, SMALT, Segemehl, circRNA_finder, find_circ
Parent gene Os08g0100500
Parent gene annotation Regulation of nuclear pre-mRNA protein domain containing protein
. (Os08t0100500-01);Conserved hypothetical protein. (Os08t010050
0-02);Hypothetical conserved gene. (Os08t0100500-03)
Parent gene strand +
Alternative splicing NA
Support reads 13/47/8
Tissues leaf and panicle/root/seed
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered Os08t0100500-01:3
Os08t0100500-03:2
Os08t0100500-02:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGAATTTTTGGGTATTCCGGATCGTCGTTGTGTTCAATATGTGAAGCATCCAGTTCCTCTCAGG
CAAAGAAAGCTCCAATTCAACTGGCAAGCACCGCAGgacatgttcctcagatgctgccggccag
acctgatattcacacatttaattgctggaggccttcgtaatgaaatttcacaaattgaactcct
tgctcgtg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 161
Transcript exons: 43389-43453,45621-45716
GACATGTTCCTCAGATGCTGCCGGCCAGACCTGATATTCACACATTTAATTGCTGGAGGCCTTC
GTTTTTGGGTATTCCGGATCGTCGTTGTGTTCAATATGTGAAGCATCCAGTTCCTCTCAGGCAA
AGAAAGCTCCAATTCAACTGGCAAGCACCGCAG

Transcript length: 175
Transcript exons: 43389-43443,45597-45716
GACATGTTCCTCAGATGCTGCCGGCCAGACCTGATATTCACACATTTAATTGCTGCGATTGGGA
GAGGCAATGATGGAATTTTTGGGTATTCCGGATCGTCGTTGTGTTCAATATGTGAAGCATCCAG
TTCCTCTCAGGCAAAGAAAGCTCCAATTCAACTGGCAAGCACCGCAG

Transcript length: 188
Transcript exons: 43389-43438,45579-45716
GACATGTTCCTCAGATGCTGCCGGCCAGACCTGATATTCACACATTTAATCAAAAAAAAAATGC
TAACCGATTGGGAGAGGCAATGATGGAATTTTTGGGTATTCCGGATCGTCGTTGTGTTCAATAT
GTGAAGCATCCAGTTCCTCTCAGGCAAAGAAAGCTCCAATTCAACTGGCAAGCACCGCAG

Transcript length: 189
Transcript exons: 43389-43467,45607-45716
GACATGTTCCTCAGATGCTGCCGGCCAGACCTGATATTCACACATTTAATTGCTGGAGGCCTTC
GTAATGAAATTTCACAGGCAATGATGGAATTTTTGGGTATTCCGGATCGTCGTTGTGTTCAATA
TGTGAAGCATCCAGTTCCTCTCAGGCAAAGAAAGCTCCAATTCAACTGGCAAGCACCGCAG

Transcript length: 211
Transcript exons: 43389-43464,45582-45716
GACATGTTCCTCAGATGCTGCCGGCCAGACCTGATATTCACACATTTAATTGCTGGAGGCCTTC
GTAATGAAATTTAAAAAAAATGCTAACCGATTGGGAGAGGCAATGATGGAATTTTTGGGTATTC
CGGATCGTCGTTGTGTTCAATATGTGAAGCATCCAGTTCCTCTCAGGCAAAGAAAGCTCCAATT
CAACTGGCAAGCACCGCAG

Transcript length: 212
Transcript exons: 43389-43482,45599-45716
GACATGTTCCTCAGATGCTGCCGGCCAGACCTGATATTCACACATTTAATTGCTGGAGGCCTTC
GTAATGAAATTTCACAAATTGAACTCCTTGATTGGGAGAGGCAATGATGGAATTTTTGGGTATT
CCGGATCGTCGTTGTGTTCAATATGTGAAGCATCCAGTTCCTCTCAGGCAAAGAAAGCTCCAAT
TCAACTGGCAAGCACCGCAG

Transcript length: 223
Transcript exons: 43389-43441,45547-45716
GACATGTTCCTCAGATGCTGCCGGCCAGACCTGATATTCACACATTTAATTGCATTTTTTTTAA
CCTTTTTTGGTTGGATAACTGCAAAAAAAAAATGCTAACCGATTGGGAGAGGCAATGATGGAAT
TTTTGGGTATTCCGGATCGTCGTTGTGTTCAATATGTGAAGCATCCAGTTCCTCTCAGGCAAAG
AAAGCTCCAATTCAACTGGCAAGCACCGCAG

Transcript length: 223
Transcript exons: 43389-43476,45582-45716
GACATGTTCCTCAGATGCTGCCGGCCAGACCTGATATTCACACATTTAATTGCTGGAGGCCTTC
GTAATGAAATTTCACAAATTGAACAAAAAAAATGCTAACCGATTGGGAGAGGCAATGATGGAAT
TTTTGGGTATTCCGGATCGTCGTTGTGTTCAATATGTGAAGCATCCAGTTCCTCTCAGGCAAAG
AAAGCTCCAATTCAACTGGCAAGCACCGCAG

Transcript length: 225
Transcript exons: 43389-43443,45547-45716
GACATGTTCCTCAGATGCTGCCGGCCAGACCTGATATTCACACATTTAATTGCTGATTTTTTTT
AACCTTTTTTGGTTGGATAACTGCAAAAAAAAAATGCTAACCGATTGGGAGAGGCAATGATGGA
ATTTTTGGGTATTCCGGATCGTCGTTGTGTTCAATATGTGAAGCATCCAGTTCCTCTCAGGCAA
AGAAAGCTCCAATTCAACTGGCAAGCACCGCAG

Transcript length: 229
Transcript exons: 43389-43490,45590-45716
GACATGTTCCTCAGATGCTGCCGGCCAGACCTGATATTCACACATTTAATTGCTGGAGGCCTTC
GTAATGAAATTTCACAAATTGAACTCCTTGCTCGTGGTTGCTAACCGATTGGGAGAGGCAATGA
TGGAATTTTTGGGTATTCCGGATCGTCGTTGTGTTCAATATGTGAAGCATCCAGTTCCTCTCAG
GCAAAGAAAGCTCCAATTCAACTGGCAAGCACCGCAG

Transcript length: 287
Transcript exons: 43389-43469,45511-45716
GACATGTTCCTCAGATGCTGCCGGCCAGACCTGATATTCACACATTTAATTGCTGGAGGCCTTC
GTAATGAAATTTCACAAGTAGTCCCTTGGCACAAGCTAGGGATGATGGATATGATTTTTTTTAA
CCTTTTTTGGTTGGATAACTGCAAAAAAAAAATGCTAACCGATTGGGAGAGGCAATGATGGAAT
TTTTGGGTATTCCGGATCGTCGTTGTGTTCAATATGTGAAGCATCCAGTTCCTCTCAGGCAAAG
AAAGCTCCAATTCAACTGGCAAGCACCGCAG

Genomic sequence GACATGTTCCTCAGATGCTGCCGGCCAGACCTGATATTCACACATTTAATTGCTGGAGGCCTTC
GTAATGAAATTTCACAAATTGAACTCCTTGCTCGTGGTATGCGGATACTCTCCTCTCTTATTCT
TATTGTATTTCTCTCTTTTATTTTAGGAATGCTCTCTTCAGGTTATTTGTCTAAGAGTCCTCCA
TCGTAAGTTTATTTTTCTAATATAAACTTATGATCCCCCCTTCTCAATTATTGTTTGTTGTATG
CAGGGTTTTCACATGGGAAATTGGGATTGCCAGAAGCCGTTTCAATTCAACTTGCAACAAGAGG
TGCTTATGCTAGTCTGTTTTGTGATGAAGATGCACTTTTGCTTATGAAGGCATGATGAAATCTT
ACATAGTATTTGGAATGAACGTTTTACATTGTAATTAGTCTTGGCAACAGCATCCAGCAGACTA
ATCTTAGTGTAAGCACATGTTTTACATGAAACAAAGTCGTCTCTGTTCATGTTGCTTCTGGTGT
GTTCTTTTTGAGGACTGCAAACTGTGTTTAACTGTTTATTGTATCATGCTCAGAAGGCATTAGT
CATAAGCAGCGAGTCCAGTAGAAATGTTGGAAGTTAATCATACCAGGGCATTCCATCTATGGTA
TTTTATGCAGTTTTACTTGGACTATTGTGTCCACTGTGAATCATCACTAAGTTCAACTAGATAG
ACATATCTAAGCTCACAATAAAAATCTCAAGCACACTGTTCTTACCGTATTGAGTTTCCTTGAG
TTTATTTTTCAATGAATTTCAGTCTGGACCCTCTCTTTTTTGCCAGTGTTTCATTTTGGACACC
ATTTAGCCCATAGTTTCACTTTGTCCCCCTCTTTTTACTTGTTTGTTTCTCTTTGGACCCTTTC
CCTCAACATTGTTGCCATCTCCGGGTAGGCGGTGGTGGAGACATGGCTAGGGAGGAGATCGCCG
ATGGCACCCGGACTTAACCTTGAGAAAAAGAGTGTAAAGGGTCCAAAGTGAAAACTAAAGGTAA
GAAAAAGCGGTCCGAAGGGAAAATATGGACCAAAGGGGGTCCAATGTGAAACTATGAAGAAGGG
GTCCAAACTGAAAATCCCTCTTATATATTAAACCACATAAGTTTATCTTATCTAATGATGGGGT
GGCAGGCATGATTATATCACTCTAAATATGTTTGAATTTATTAGAGGGGAAATGGTGGGGTGTT
TTATTTGCAGAAAAAACAATAAAGAGGAAATTTGCAAGGTCGAGTTAAGTTTTAAAAGATGGCT
GGAATTAGTTGTATGCTGATAATCTTTTCATAGAGAAACTGTTTGGTGCCTGTAAGTGCATTAT
GCACGCTTCAAAAAGTCTGAAAATATTGATTGGATGCTTTCATTTGATGTTTTGCAAACATACT
GAATTTTATGGTAAAGTTCGTCCATTCAACATAATAATGGGAAAAAAACACATCATCAAGCACT
GCTTCTGTTAAATGGTTCTTTGCATTATGGAAAATTTTGAACCTTGGAATTTTGCATATACGCA
TAACATACTCTATCCTTGAAATCAAGGTTGCCCTGCAGGATATATTAACTTGATTATGTTATCC
TTTGAACAGAACTAAAAGCTGCTGGAAAGTTATGGAACTTTGAACTATCAATATCTTCTTACTT
CAAGTCTGATTTATGTCCTGTTCCGAATTTCCATTGATGCACATGGCTATTATTTGGTTTTGTG
GTTTGTAATTTAGTCTTTGTGCAAATTGGTAGCATTGTCTGAATTCTGTAAAGCATTGCTCCTT
CCATTTTTATGTGTGCAAAGAAGTATAGAGGGCTAATATGTGGCTAAACTGCACTTGTTGCCTT
GTTGGTAATCATGGTGCTATATTTTCTGGAATTTGCCTTTGCTTAGCTTAACTTCGTTTGTCAC
TATGACAGGTCTAAACAATTTCTGTTACTGAAAGGCAAGGGGTTTCTTCTGGCTTGTTTGGTAT
GGCCGTTGGTTACTCTGATGAAGTTGAGGGGAGCTTCTGTGGCAAGTTCAATGCCAATGCTGGA
TTGAAGAGGCAAAATGTAGATTTGTACAAAGAAAGAGGGTACTCCATGTACAGTTGATAACATT
ATTATGCGTTGTAGTCCCTTGGCACAAGCTAGGGATGATGGATATGATTTTTTTTAACCTTTTT
TGGTTGGATAACTGCAAAAAAAAAATGCTAACCGATTGGGAGAGGCAATGATGGAATTTTTGGG
TATTCCGGATCGTCGTTGTGTTCAATATGTGAAGCATCCAGTTCCTCTCAGGCAAAGAAAGCTC
CAATTCAACTGGCAAGCACCGCAG
Conservation Information
Conserved circRNAs osi_circ_007477* osi_circ_018270
PMCS 0.403758985
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA