Detail information of BGIOSGA001886_circ_g.1


General Information
CircRNA Name BGIOSGA001886_circ_g.1
ID in PlantcircBase osi_circ_008942
Alias Chr02:25782812_25784254(MH63RS2), Chr02:26334033_26335475(ZS97RS2), Chr02:25782812_25784254(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 10950402-10951709  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA001886
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-AA
Number of exons covered BGIOSGA001886-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATTGACGAGATTACTGACGTCGGCGAGGGCTCGACGGATTCTTGGCGGTTGCTGAGCAACAAC
CGTCGTGGTCTTTGGCCTCCTCGCAATCTTGGCAGCgtcatgtgctccagctgcattgacagaa
aaaagaatggcacattacaacacattgaagatgtatagcaccagcagaagaaaaactgaaaatg
gactgtgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCATGTGCTCCAGCTGCATTGACAGAAAAAAGAATGGCACATTACAACACATTGAAGATGTAT
AGCACCAGCAGAAGAAAAACTGAAAATGGACTGTGCTTGTTAGTTACCTCCTCGTCACCCAATG
CAGCTTTCAGGTATCGAAGGATGAACATGTACATTGTCGGAACAGTCAGGTTCCACTGGAGCTT
GTTAAGTATGGACTTCTCTGTGCTCAGGACCTGCTGCCTGCTGAAGGAGTTGTCTGATATGACA
AGGAAGTCCTTAACCTGCAAAAATGGCAGCTCAACTGTAAGACAAGAAGCAAGTGCAAGCTGAA
AGTCATATGCAAATTGAACAGCATTGAACACAATAGCAAGTTGAGCATATCATATGCAAAATTG
AACGGCATCAGTGGTGTGCAGAAGTGGAATCCTTACCAATGGAGCCCAAGTCTCCTCATACTTG
CAGGCTATCAACATGGCGCTTACACCGACAAGCTGCAGCTCCTTCCTGGGCACATTCTCCAGGG
ACAGGTACTGATCAATTATGTAGACAGTGAGGTACAGTGTCTCTGGCATCAGCATAAGCCTGTA
GTGCACTTCGATGAGCCAATCAGTCAGGATTGCTCTCATTCTCCCGTTGATCTCGGTCTGTGAC
ACCATGTAGGTGCAGAGAGGCCGGTAGGTGTTCTGGACAAATCAAGCAGCAAGAGTAATCAATC
ACCGTTCCATCACCAATTGATTTGGCATAAAAGAAGAGGAAGCTAAGCTCACCTCGGTGTTCCT
GTAGAATCTGTAGATATCTTCGACGTAATCAACCACTGCCAGCTCGTTGTGAGCATCAGATGCA
TCGATGTCGTATATCAGCTCCTTTTTCGGGCTGATCACACCGTCAGAAGCCTGTGTTCAGAACA
AGTTCAGCAAAAGAAGAACAAAACGGATTCTTCAGACAAAAATTTCCCAACATTACAGAATCAA
ACAACACCAAAGAACACATACCCTGCTGCACTTGGTCAGAATCGAGGTGAGCGTTTGGATTGGC
GCCCTCCGGGAGGCTGCTCTCTGGGCTGGATTTTTCTTATGTTTCTCGGAGTCTGAACTGATCA
CGATGACTTCTGGCTTGGCCGCCTTGTTGTTCTCGTTGCGCTGCTTGATTGGTTTCCTGCACTT
GTCAGCTGCTGCTGCTGCTGCCTTCTGGCGATTTACGACAGGCAGAGCAGCCCGGCCATTGACG
AGATTACTGACGTCGGCGAGGGCTCGACGGATTCTTGGCGGTTGCTGAGCAACAACCGTCGTGG
TCTTTGGCCTCCTCGCAATCTTGGCAGC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021