Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d053412_circ_g.1 |
ID in PlantcircBase | zma_circ_008275 |
Alias | zma_circ_0001706 |
Organism | Zea mays |
Position | chr4: 230694316-230697297 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d053412 |
Parent gene annotation |
RHOMBOID-like protein 9 chloroplastic |
Parent gene strand | - |
Alternative splicing | Zm00001d053412_circ_g.2 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d053412_T005:5 Zm00001d053412_T002:5 Zm00001d053412_T004:4 Zm00001d053412_T001:5 Zm00001d053412_T003:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.011710424 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
230697213-230694409(+) 230697292-230694318(-) |
Potential amino acid sequence |
MTTSLMQLSYVPSVYKMPVSIYKPQPSDASCQFSQKCSIRSSKLQLSQPARTYFLKRPCQ*(+) MAGVYKWKLASYKQMERTKVASERLSLRSNSTKHHDTVHLGLGHFGKDGNLICRSLKSILKPKA RQYAIVKVHNKDVDEGCSSKDNEIISSPSDRKEGSQLRALESYFSKFNPSQQLYSLPQKKHKSG PSSSNEVDAIIADEDANLKNRADSLQVQIDRGHTGIKSNQNTPNEVYKEYLIFDEKSLLDMHTD DQASGFCLTNLLAGVNIAVLLFEIASPVKNSENEYLSLPLLYGAKINNLILSGEWWRLLTPMCL HSGFLHIALGCWALLIFGPRVCRAYGQRTFFLIYILGGICGNLSSFVHTPEITVCGTGPVFSLI GAWLVYQGQNKQVIDKDVSESMFWQAVIAAALSFLLSIFGRIDNWHLMAGVYKWKLASYKQMER TKVASERLSLRSNSTKHHDTVHLGLGHFGKDGNLICRSLKSILKPKARQYAIVKVHNKDVDEGC SSKDNEIISSPSDRKEGSQLRALESYFSKFNPSQQLYSLPQKKHKSGPSSSNEVDAIIADEDAN LKNRADSLQVQIDRGHTGIKSNQNTPNEVYKEYLIFDEKSLLDMHTDDQASGFCLTNLLAGVNI AVLLFEIASPVKNSENEYLSLPLLYGAKINNLILSGEWWRLLTPMCLHSGFLHIALGCWALLIF GPRVCRAYGQRTFFLIYILGGICGNLSSFVHTPEITVCGTGPVFSLIGAWLVYQGQNKQVIDKD VSESMFWQAVIAAALSFLLSIFGRIDNWHLMAGVYKWKLASYKQMERTKVASERLSLRSNSTKH HDTVHLGLGHFGKDGNLICRSLKSILKPKARQYAIVKVHNKDVDEGCSSKDNEIISSPSDRKEG SQLRALESYFSKFNPSQQLYSLPQKKHKSGPSSSNEVDAIIADEDANLKNRADSLQVQIDRGHT GIKSNQNTPNEVYKEYLIFDEKSLLDMHTDDQASGFCLTNLLAGVNIAVLLFEIASPVKNSENE YLSLPLLYGAKINNLILSGEWWRLLTPMCLHSGFLHIALGCWALLIFGPRVCRAYGQRTFFLIY ILGGICGNLSSFVHTPEITVCGTGPVFSLIGAWLVYQGQNKQVIDKDVSESMFWQAVIAAALSF LLSIFGRIDNWHLMAGVYKWKLASYKQMERTKVASERLSLRSNSTKHHDTVHLGLGHFGKDGNL ICRSLKSILKPKARQYAIVKVHNKDVDEGCSSKDNEIISSPSDRKEGSQLRALESYFSKFNPSQ QLYSLPQKKHKSGPSSSNEVDAIIADEDANLKNRADSLQVQIDRGHTGIKSNQNTPNEVYKEYL IFDEKSLLDMHTDDQASGFCLTNLLAGVNIAVLLFEIASPVKNSENEYLSLPLLYGAKINNLIL SGEWWRLLTPMCLHSGFLHIALGCWALLIFGPRVCRAYGQRTFFLIYILGGICGNLSSFVHTPE ITVCGTGPVFSLIGAWLVYQGQNKQVIDKDVSESMFWQAVIAAALSFLLSIFGRIDN(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |