Detail information of Zm00001d053412_circ_g.1


General Information
CircRNA Name Zm00001d053412_circ_g.1
ID in PlantcircBase zma_circ_008275
Alias zma_circ_0001706
Organism Zea mays
Position chr4: 230694316-230697297  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d053412
Parent gene annotation RHOMBOID-like protein 9 chloroplastic
Parent gene strand -
Alternative splicing Zm00001d053412_circ_g.2
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d053412_T005:5
Zm00001d053412_T002:5
Zm00001d053412_T004:4
Zm00001d053412_T001:5
Zm00001d053412_T003:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTATTAGATCTTAATGACAACCTCTCTGATGCAACTTTCGTACGTTCCATCTGTTTATAAGAT
GCCAGTTTCCATTTATAAACCCCAGCCATCAGATGCcagttgtcaattctcccaaaaatgctca
ataagaagctcaaagctgcagctatcacagcctgccagaacatactttctgaaacgtccttgtc
aatgactt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGTTGTCAATTCTCCCAAAAATGCTCAATAAGAAGCTCAAAGCTGCAGCTATCACAGCCTGCC
AGAACATACTTTCTGAAACGTCCTTGTCAATGACTTGCTTGTTTTGACCCTGATATACCAGCCA
TGCTCCAATTAAAGAAAATACTGGGCCCTGTTTTGAGTTTCAGAAAGGAACATTAATGTTTACG
TCCTCTGTATATTTATCCAGTGCCACGAACTTGAAACCAAATGTGCAGTCTATACCACTATAAC
CAATATGAAAGATGATAATGGTATAATCAATTATTGGATAGAAAGTTTAAGCTAATTTAGGTTT
TCCTTTCCTTCTGTAAATTGTATCCATTATAAATTATGTAGTCTATTTGCTTTCTAGAAAAAAT
GGTAATCTAATTATACATTATTTTTCTTTACTACTTTTGCTTGAAAGAGTAAATGCAAAGCTAG
GGTTAGAGTGATGAATGAAAATAATAAAGCAAATATATGTGCATTATTTTCATCTAATATGATC
ACTCGGAGGTAAGCAACTTACTGTGCCACAAACGGTTATCTCAGGAGTGTGAACAAAACTGCTC
AAATTACCACAGATTCCTCCAAGTATGTATATCAGAAAAAATGTCCTTTGACCATATGCCCTGC
ATACTCGAGGTCCAAATATAAGCAATGCCCAACAACCAAGGGCTATATGTAAGAAACCAGAGTG
CTGCAGACGTCAAATTACAGAAACACTTCAGATAAGCTTAGTGGGTTACAGGTCTGGCTAAATG
ACATGGTATAACCAGTGTAGAAACTAGAAAGCTAAGATGAAAACACAGCTATATACTTGTATGT
TAAACTTGTTTTCTAGTAAAGGGCTAATCCACTAGTTGACACCGCATTGGCATTGTAGTACCTA
AGCATTTTGTATATAGTTTATACGGTGCACTGGATAGCAGTGCAAGCACTGAATCAAAAAGAAG
ACAGAACATGTGTATTACTTGTTTTCATTTTCCAAATGCAAGCAAATCTGAAGCTCTATGCTTA
CTAACATAGAATAAGTTCGGCCTGAGCTACTTTTGCACATAAGATTTAAGGAAAGGACTGCTGT
AGCACAGTAATTAACCTTGAACTTTATATTGTTTAGAGTGTGTGGTAGCTTTTGCCTTTCTAAA
ATTAATAGATCGCAAACCACAAAAACAATCTCAGCCAAGAGAATTTTAATTTGTGATACTTTAT
CTAGCATAGAGGGAGAAGTAATACCAGGCACATTGGTGTTAGTAGTCTCCACCACTCCCCTGAA
AGTATTAAGTTGTTTATCTTGGCACCATACAACAAAGGGAGGGATAAATATTCATTTTCAGAAT
TTTTCACTGGACTTGCTATTTCAAATAACAGAACTGCAATATTAACACCAGCCAATAAGTTTCT
GCATTTTTACACAATTCAAGAGTTAGCGAAGAAAACGTGGCAATATGAAAATATTTATTACTTA
TGCTGAAGTGTGCAAAAGAACAAGGGACGCAAATAAGCTGGTGCATTGGACAGTGTGGTTTGAT
CTTTTTAACTGGGCGTTTTCTCCCAGTTTTGTTGTCCCAGTTTTATGGCCATTGCAAGTTGTTA
TTTTTTACTAATATCACAATTTTAAAAACTTGCCCAAATTTTTAGGACAATGTCAATACTAGAG
AAAGTTGGGAAATGAGAAATTGGATATTGAAACCTTTTTAAAGCAGAAGCTAGCGAGTTCAAAA
TCTTTTTTGCTAGTCCCATACTCCCATACTGGGGGCAAAGTTGTAGCAATGTGAATATGTGACA
AACAGAAGGAGCAGTTGATTTACGCTTGCCGTAATCTGGATTCTCCCGTTATGCAATTTTTTTT
TGCCTCTCATTGATGTCTTTTTATCTTTAGAATTGAGGAATAGTGTTCAACTCCTATCCGATGT
TTTTTTTGCACATGTGGTTGTGGATTTGGTAGTGCTAATCATATCTTGTCATAATTTGGACTAA
TGTCACTTTCATGAAGGCTACAACTTTCTTCTGTTATCTAAATAAAAGGAAAAGCCCACAGTTA
AACAAGTTTTGTTTTCCTGTAACTTTGATGTGAGAAATCATTGTTCACATAAAACAGGAGGTGA
CAAATATATCCATTTTCTGTTCTTCACATGAATTCCACATTAATATCAATAGCAGGAGATGGTG
GTACTAGAATCACCGTATCTATGATAACGAAACTATATTTCTGAATATCACCAAATAATAAAGG
AATTACATGCCCAATCTGGCAGTTCCAACTTGTACTGGAAGTGGTAAGACATACTTACGTCAAA
CAGAAACCAGACGCTTGATCATCTGTATGCATGTCCAGGAGACTTTTTTCATCAAATATCAAGT
ACTCCTTGTAAACCTCGTTGGGAGTATTTTGATTACTCTTGATACCTAAGTAACATAGTTCTTT
TAAATTAATAAGTTTTGGTGGTGACACATCCATACTGGTAAGTCAAGTGACTTTACCTGTGTGT
CCTCTGTCAATCTGTACCTGCAAAGAGTCTGCCCTGTTCTTCAAATTAGCATCCTCATCAGCAA
TGATTGCATCAACTTCATTTGACGATGATGGACCACTTTTGTGCTTCTTCTGAGGCAAAGAGTA
TAACTGCTGAGAGGGATTGAATTTAGAAAAATAAGATTCCAGTGCCCTCAGCTGACTTCCTTCT
TTCCTATCAGATGGACTAGAAATAATCTCATTGTCTTTGGAGCTGCAACCCTCGTCAACATCTT
TATTATGTACCTTGACAATAGCATACTGTCTTGCCTTTGGTTTTAATATTGACTTAAGTGAACG
ACAAATGAGATTGCCATCCTTCCCAAAATGACCAAGACCAAGATGTACAGTATCGTGATGCTTG
GTGCTATTAGATCTTAATGACAACCTCTCTGATGCAACTTTCGTACGTTCCATCTGTTTATAAG
ATGCCAGTTTCCATTTATAAACCCCAGCCATCAGATGC
Conservation Information
Conserved circRNAs NA
PMCS 0.011710424
Functional Information
Coding potential Y
Potential coding position 230697213-230694409(+)
230697292-230694318(-)
Potential amino acid sequence MTTSLMQLSYVPSVYKMPVSIYKPQPSDASCQFSQKCSIRSSKLQLSQPARTYFLKRPCQ*(+)
MAGVYKWKLASYKQMERTKVASERLSLRSNSTKHHDTVHLGLGHFGKDGNLICRSLKSILKPKA
RQYAIVKVHNKDVDEGCSSKDNEIISSPSDRKEGSQLRALESYFSKFNPSQQLYSLPQKKHKSG
PSSSNEVDAIIADEDANLKNRADSLQVQIDRGHTGIKSNQNTPNEVYKEYLIFDEKSLLDMHTD
DQASGFCLTNLLAGVNIAVLLFEIASPVKNSENEYLSLPLLYGAKINNLILSGEWWRLLTPMCL
HSGFLHIALGCWALLIFGPRVCRAYGQRTFFLIYILGGICGNLSSFVHTPEITVCGTGPVFSLI
GAWLVYQGQNKQVIDKDVSESMFWQAVIAAALSFLLSIFGRIDNWHLMAGVYKWKLASYKQMER
TKVASERLSLRSNSTKHHDTVHLGLGHFGKDGNLICRSLKSILKPKARQYAIVKVHNKDVDEGC
SSKDNEIISSPSDRKEGSQLRALESYFSKFNPSQQLYSLPQKKHKSGPSSSNEVDAIIADEDAN
LKNRADSLQVQIDRGHTGIKSNQNTPNEVYKEYLIFDEKSLLDMHTDDQASGFCLTNLLAGVNI
AVLLFEIASPVKNSENEYLSLPLLYGAKINNLILSGEWWRLLTPMCLHSGFLHIALGCWALLIF
GPRVCRAYGQRTFFLIYILGGICGNLSSFVHTPEITVCGTGPVFSLIGAWLVYQGQNKQVIDKD
VSESMFWQAVIAAALSFLLSIFGRIDNWHLMAGVYKWKLASYKQMERTKVASERLSLRSNSTKH
HDTVHLGLGHFGKDGNLICRSLKSILKPKARQYAIVKVHNKDVDEGCSSKDNEIISSPSDRKEG
SQLRALESYFSKFNPSQQLYSLPQKKHKSGPSSSNEVDAIIADEDANLKNRADSLQVQIDRGHT
GIKSNQNTPNEVYKEYLIFDEKSLLDMHTDDQASGFCLTNLLAGVNIAVLLFEIASPVKNSENE
YLSLPLLYGAKINNLILSGEWWRLLTPMCLHSGFLHIALGCWALLIFGPRVCRAYGQRTFFLIY
ILGGICGNLSSFVHTPEITVCGTGPVFSLIGAWLVYQGQNKQVIDKDVSESMFWQAVIAAALSF
LLSIFGRIDNWHLMAGVYKWKLASYKQMERTKVASERLSLRSNSTKHHDTVHLGLGHFGKDGNL
ICRSLKSILKPKARQYAIVKVHNKDVDEGCSSKDNEIISSPSDRKEGSQLRALESYFSKFNPSQ
QLYSLPQKKHKSGPSSSNEVDAIIADEDANLKNRADSLQVQIDRGHTGIKSNQNTPNEVYKEYL
IFDEKSLLDMHTDDQASGFCLTNLLAGVNIAVLLFEIASPVKNSENEYLSLPLLYGAKINNLIL
SGEWWRLLTPMCLHSGFLHIALGCWALLIFGPRVCRAYGQRTFFLIYILGGICGNLSSFVHTPE
ITVCGTGPVFSLIGAWLVYQGQNKQVIDKDVSESMFWQAVIAAALSFLLSIFGRIDN(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b