Detail information of Os01g0267900_circ_g.1


General Information
CircRNA Name Os01g0267900_circ_g.1
ID in PlantcircBase osa_circ_001261
Alias Os_ciR6655
Organism Oryza sativa
Position chr1: 9195801-9196004  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os01g0267900
Parent gene annotation Similar to Calmodulin NtCaM3 (Calmodulin NtCaM4) (Calmodulin NtC
aM5) (Calmodulin NtCaM6) (Calmodulin NtCaM7) (Calmodulin NtCaM8)
(Calmodulin NtCaM11) (Calmodulin NtCaM12). (Os01t0267900-01)
Parent gene strand -
Alternative splicing Os01g0267900_circ_g.2 Os01g0267900_circ_g.3 Os01g0267900_circ_g.4
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os01t0267900-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGACATGACGGAGTTCAGCTGCCGAGATGAAGCCATTCTGGTCCTTGTCAAATACACGGAAGGC
TTCCTTGAGCTCCTCCTCAGAATCAGTGTCCTTCATcttcacgaattcttcgtaattgatctga
ccatcaccatcgacatcagcctcacggatcatctcgtccacctcctcgtctgtaagcttctcac
caaggttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCACGAATTCTTCGTAATTGATCTGACCATCACCATCGACATCAGCCTCACGGATCATCTCG
TCCACCTCCTCGTCTGTAAGCTTCTCACCAAGGTTGGTCATGACATGACGGAGTTCAGCTGCCG
AGATGAAGCCATTCTGGTCCTTGTCAAATACACGGAAGGCTTCCTTGAGCTCCTCCTCAGAATC
AGTGTCCTTCAT
Conservation Information
Conserved circRNAs NA
PMCS 0.913378309
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015