Detail information of BGIOSGA016850_circ_igg.1


General Information
CircRNA Name BGIOSGA016850_circ_igg.1
ID in PlantcircBase osi_circ_014603
Alias Chr04:27693890_27696439(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 25883844-25886394  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATTCCAGTTGGAATAATCCCAGCAGGATCTGACAATTCACTTGTTTGGACTGTTTTGGGAGTT
AAAGATCCAATTTCAGCATCATTACTAATTGTGAAGggctatttttagttgttagcaactttga
catggcattgatgccatgatcatacacctatgaggtcatgccaaattcctgatctatactgatg
ctctgaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGCTATTTTTAGTTGTTAGCAACTTTGACATGGCATTGATGCCATGATCATACACCTATGAGGT
CATGCCAAATTCCTGATCTATACTGATGCTCTGAAGTCCTCTTTAAAAGAAAGAGATGGAAGTA
GCTGATCTAGAAAATCCTACTTCCAGAAGCTCATCCCAGAAGTCCAGTCGGCGGTCTGGTAGTC
GGCGTTCTCAAAAGTCAGCCGGGCAACAATCTTCACCAACTGTATTTCCAGAGAAAAAAGGCAA
ATCAAAATCTTCGAGGCAGAAACACTTGGTTTTTGACAATAAAGATTCCAAGAAAGCAAAAAAT
AATGAGCAAAAAAATGATGTGGTGGATGAGAAGTCTAATTTCTCAGGTTATGAAATCTATTCTG
GAAAACTCTTTTTTGACAAGAAAAATAGAATTACAGGAGATCAAATTTCAGCAAATGGGAAAGC
TGATATAAGTGATGTAAGACTCACAAGTAAAGCCCTAATATGGGGTTCTTCTTTACTCAGTCTT
GAGGATGTCATCTCTGTAAGTTTCACAGACCAAGACACTACTATAATTCTATTGCTATTTGGTC
CACTTGGGCTGACCATCTATCTTTGATGATTTGTTTATATGTTGGCAGGTATCTTACAGTTCTG
GTGTCCAACATTTCATTGTGCATGCATACCCTTCTAAGAAGTATTTGTTTGGAAAGACACACAG
AGTACGGAAGGACCTCCGGTTTATAGCCCCTACTGTAGAGGAGGCCATTTCATGGGTAACATGC
TTTGCCGAACAAAACATATATGTTAACATGCTACCTCTCCCTCCAACATCCAGTACCGAGCAAG
ACCTTGATGGTCCCCTCAGTGGTGCTTTATTTGACCACCCACCCATCAAATGTAGAACTCCACC
GAGGATACTTGTTATACTGAACCCTCGGTCTGGGCATGGTAGATCATGCAAAGTTTTCCATGAC
AAAGCAGAACCTATTTTTAAGGTACCTTCTGATACTCTCATAATGCAAGCTTCTACTTATTGCT
CTGCAGTAAGCAACATATAGCTTGACTAACTGTATATGTCTATTATTCTTCTTGGCAATAAACT
TTCTTTTTGAAGCTTTTCTTTAAACCATTCGCTGTTTAGTCTCAAGGAGATGTCATGAGGAATA
GAATAGTACCTCTGTTCTTTTCTGTATCGAAATTATTGGTTGTTTCATGTTCTATGATGTGTAA
CTTTGAATTAAACTCTGTAGAACTTAATATTGTTACAACTTAATGTTTCTTATGATGCAAATCT
ACTGATGTAGTTCTTTTACGGGCAATCTAGATACCTCCAAACATATTGATGGTTAATGTATAGA
TTATTTGACCATGGAGATTCTTTAGTGCCAACTAAAGAGGAATGTTTGGTATTTTTTGTATCCC
AGTAATGGATTTTTAGTTCCAACAGTGAAGAACTCATGAAGAGCATATCACGTTTCTCTTTAAT
GGATTTTTAGTTCCAACCTGAAGTGTTAAGTTTAGAAAATATCAAAATAATGATCCACGGTTAG
ATTTGCAGATGACTAATTTATGTTTGTTGTTTGCCCTACCAATCTAGACATGTGGGGGACATCA
TACATTCCTTCTATTTTAGTAGCTCTACAAAACTCCTGGGCTTCCATCTGATGCTTTAGCAGTA
AAGGATTCAATTGTGAATGCAGCAATGGAGTTGGACATAAAGCTGGGTAAAATTTATTGACAAA
AGGTTAAGGGAGATTATTTAACCCCCTTTCTCCTGGCAGCACAGGCTGTCAAGTTGCAAATTTA
CTTTTCAATTTAGACCAACTAAAATTGCACTTCCTTCACCTTTTAATCGAAAGTGTATAATCGC
AGTTAACTTATAGGCCTCCTTCGAGATGTCCTTTAAAAAAAAGAGAGAATTGTGCTGACTCGAT
CACCTCCTCTCCTCTTAGATATTTGCTAATGGATTATTTTTATTGCTTGTATGCATTCACATTT
CTCAACTTGGTGATTTTTTACCCGTTACCCTGTTTTTATTATTCATGCGTGCCTACATAAACTT
TATATCATTTATTTCCCGCTATTAATTTTGTATCATCTGATGTAGCTTGCAGGTTTTCACATGG
AAGTGGTTAAAACTACTCATGCTGGTCACGCTAAATCTCTTGCATCTACATTTGATTTTAGCGC
ATTCCCTGATGGTATAAACAGCACAGATGTTGCCAAGTAGTTTATGTAGGTCAACACGGCAACC
ATTTCAACTGGTTGAATTGATAATGTATTAAATGTTTTGTAGGAATCGTGTGTGTAGGTGGTGA
TGGAATTGTAAATGAGGTTTGTCCTTGATGATTATATATTATAGTTTAATGGGATTTAGTAAAA
CTTATATATGATAGCTGAACATTTATAGTTCTGCAGGTCTTCAACGGTCTACTCAGTAGAAGTG
ATAGAGCAGAGGCTGTATCAATTCCAGTTGGAATAATCCCAGCAGGATCTGACAATTCACTTGT
TTGGACTGTTTTGGGAGTTAAAGATCCAATTTCAGCATCATTACTAATTGTGAAG
Conservation Information
Conserved circRNAs osa_circ_024711
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021