Detail information of LOC18055195_circ_g.1


General Information
CircRNA Name LOC18055195_circ_g.1
ID in PlantcircBase ptr_circ_000039
Alias circRNA039
Organism Poncirus trifoliata
Position chrNW_006263303.1: 23678360-23682545  JBrowse»
Reference genome Citrus_clementina_v1.0
Type   e-circRNA
Identification method CIRI
Parent gene LOC18055195
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues shoots
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered XM_024178316.1:15
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTTCAACAAACGGATCATTCTTTCTTTGCTTCTTTTCCAATGGGGGCTTTTGCCATTTTTTTC
CTCTTTTCTTATTAAGCACAACGGGCGCCATTAAAGctttgctacaaagaatccatccatgttg
tgaacgtgaggatagaaacgccttgtcttttccaaggatggatgaaatcgatgttccctgaagc
gaacaaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTGCTACAAAGAATCCATCCATGTTGTGAACGTGAGGATAGAAACGCCTTGTCTTTTCCAAG
GATGGATGAAATCGATGTTCCCTGAAGCGAACAAATCTGTAAAATAGAAACATTAGTAGATGTT
GGAATTAGCAATGTTCAGCACCAATTACACACTCGAAAAGATGCAAGAAAAAGCATTACCCCTG
CCGTCCAAAGTCAAGCCCACACGGCACAAGTTTAACATCCCTCTTTTTGAGTGCATAGTCAATG
ACTGCTTCATTCTGTAACAGATAATCCACAGTGAGAATTCTTATTAATTTGATTACCGTCAGGA
GAAAAGGAACTGGAAATTTGCAAGCACATCCAACCAACCTCAGTAACCATTATGGAGCATGTGG
AGTAAACAATATATCCCCCAGACTTGGAATTAGCATCCACCATGTCAATGGCGGCAAGAATCAG
TTGCTTCACAGAGAGAATGTCATCAAAATCATTGATAAACTGAATATAACAAAAGAATAGCTGG
AAAAAGAAAATGATATATAGAAAAGGTATGTGCTTGTTCGCTAGCAAGGTAAAATTAGTCATAC
AATGAGCTATTGTACATTTCAACAGTTAAAATCTTAGGAAATGAGGAGCATTGACATTTTCTTT
CCAACTTATAGCTAGGGCCAACTGTTTTGATCAATTGGCACATAATAAATAGATATTTGAATAA
ATAGATATTTGGCAAGAGAATTATTCTTCTCTGCTCCTCCCTCAGACCTTAGCTCCTAAATGCA
TCTAAAAGAAAATGCTTCAAACATGTAGGAGGAACATACCTTCTGCAAATAGGAGCATTTCTGT
ATATCTTCAAGGCTTTTAGAGGTTTTAACAGACTCGTCTTTAGAAATAACCTGCACACCATAAG
GTAGGGATCATTTTGCTCTCATCAACTCAACTTCACGACAAGAAGCCACCCAAAAGGAGTGAGA
ACCGAAATGCTTACCCCAGTGCCACTACATGGTGCATCCAACAATACCCTGTCAACAGTATTAA
GACCCAAAACCTTTGGCAGCTGAAAGAAAAGAACATTGGACAGAGGAAAGAAGAGGCGTCAGAC
ATGTTCAGTGGGTGTCAACACTGCTTATCTAAAAGCAATAGTATATGATGATACACATAAAAAG
GCTATTTTTGTATAGATCACCAGCATATATAAAGGTTTCAATTTCAAGTCCATTACCCATTTAT
AAGGAATAAAACATAGATATGGAGTAGGTTTCTGCAATTGCTCAAACAAAATCCACGCATTATT
AATTTACAAAGCAATTCAATCACCAAACAAAATATCTGCTAAGCCTCAATACCAGCTTGCCAAC
GGTACCAGGAAGGAAAAAGAAACCAGAGCACAATAAATTGTAAGAAACCTTAAAAATTTGAACT
TTAAAAGTATTTCATTAAGTTTGAAATACAGGTAACAAGAAGCTAACCTCATTGCCATCATAGT
TGCAAACTATGGTGTTAGTCACCCCCATACGATGCAAGTTCGCAGTTAGAGACTTGAGTCTTGA
TGCCTTCATCTCATTTGCATATATCAGTCCTGGGAATTGAATTGGAACAACAGACGAAGAACAA
AATTCAAATAAGGAGCTTGTTTTTGATAAAGTAATGAAGAATGAGAACATATATGTCCTCTGGT
TCCAATAAATTGGTTACAACATACATGGGACTGGAAGAAGCAAGATTAATGAAATAGTAATTAG
AAATTTTTTGGGTGTAGAATATCATCAATACTTGACAGTACAACATAAAAGAATCAGATATGGA
AACTTAACCATGTTTTGACATAATCACAACTCAATCAATTGAATCTTTCAAAGATTACCACATA
CCTGTATTTTTCATAAGAGCGGCAATGTAAGTTGTTTTACCACCAGGTGCAGCACTGTAACAGG
TATAATTGCCATCAAAAGTGAGAATAATGTGAGACTTGAACTTGCTGTGAAACTGTTTAGGACA
TTCATATTTTCTAATGACAGTTAAATTTCATCCTTGTTTTATCACCAAGTAGCACACAGCAACT
AGCACATATTAGTCCAGGGTACCGTAATAAACCATTTTTCCCTTTATGTTCTATGTAATCAAAC
CAAATAGTTTTTGGATATGCTAGATATATTAAACTTCCTGTGTGCATCATTTAATTGTACTTAA
TCTGAGAATACTTTAGCAGGCTTGACTGAAGTAGCAGAATGCTATAACGTAAATTTAAAAGGTC
GGTTTTGAAAGAGTCAAGCAGAAGTTATTAATTTCTGTTACTCAAGAAAAAGTAGTCTTGAGCA
TTATGGCTTCCAAAGAAAATCAAGATAGTTTCTACCAAAATGGTATGAAAACCACAGCAGAAAC
ATGGCACAGAACAGGATAGCAGTAAAAATGATGGGATAACTTACGCCATATCAATGACTCGCTC
TTTTTCTTGTGGAGCAAGGGCCATCACAGGCAGAAAAGAACTCGCACTTTGAAGCTGGCAGAGA
AAATAAATCACAAGCTTGAGTGCAACATGCATAACATAAAAACCACAAACATAATGTGAAGAAG
AAAGCCCTTTGTACCATGTAAAAACCAGCCATATATTCTGGTGTAGCACCAATTGGCACTTGAG
AATCATAGACAACTAAACCAACCTGCAATAACAGTATTCAAGTTGTCAGGTTCACAACATTCAA
CATAAAATATAGAAAAGGAAGAGTATTGAATAAGGTAATTCTTACTTTTGACCACTTGCTTAAG
GGGTCTAAATTTACCCCTCTGTTGATGAGAACATCAGCCAAATCACGTCTCCGTGTCTAAGCAC
AGACAAAAAAAATTAGAATTCTATCAAGATGCAGAATAATGGGCAGAAAATGTATAATAAGACA
CACAACAGAATGCAGCAACGCAAAATGTAGCGCCACCTTTAGAGTGTTGGTTCTTAGACATATG
GGTCGAGGCTTTTCAAAAGATTCAATAAGTTCCATAAGTTCAACCGGTGGAAACATCTGTAAAA
GAATTGCACATTTTAACATAAAATACATCCAAAACCAAAACCCTCCAGCCACACACAAATTGAA
AATGAAAAAGGTAGCACAAAAGGCAGAGAGAAGGATAGCCGTAGCAGACAAGGAAATAACAATT
GACCAATTACCTCTACCAAAGCTCCAATTAGGAACTCATTGTAACCATAGTATGACCCTAAATC
CAGTTTAAGTTGCTGAACATATTCTTTCCTTGATGTTCCTTTTTGACTCAAATCCTTAAAATTT
GAAAGCACTCGAACAACTGTAATTAAATAATAAAATTATATTTGAGGGTAACCAACTTAATTTT
GAAAACGTGAACCATAAAAAACAGTGAATTAGTGGAAATATAACTCACTCTCTTTTATTCTCCT
CTGAAGATTTGGCAGATCAGGAGGTTGCTGTTTCTCTTCTTCAATTTCCTAAAAACCATTCATG
AATAGAATCTATCAATTAACGAAAAAATAATATCCACCAAACACTATATTTAGATAAGTTAGAT
ATGGAAAAAAAGAATAAGAAAAAGTTCAGGAAATGATAAGAGACCTCCTTGGTTGGCAATCTGA
ATTCATCAGACTCTTCTCTAATGTTGAGCTGCATTTCTTCAAGAGCTTCTTCTTTTTCCCTTGC
ACGTTCTTCATCAATAGCTCTCGACTTCTTTTCAATGTCAGATACATCTGAATCCGAATCTGAA
TCCGAGTCTGAACCTGAATCAGAATCTCGACCTTTCTCTGCATCAAGAGAATGATTTAAAAGAA
GAAAAAAAACATAATTCATGAAACAAACTCTCCAACTGGAAAAAAAACATAATTCATGAAACAA
ACTCTCCAACTGGGAAAACTGTGAACAAAAGAAAAAGCCATACAGAATGGTAGAACCACAGTAC
CTTCATCATCGCTTCCTCGAAGGAAATCATCAGCAAGCGGATCATCTCCATCGGAAAGTAGTTC
AGAACCAGTGTCTGAACCAGACTCTTCCCCTTCATCCTCAAATTCTTGAGGATCTTTTACTTCT
TCATTTTCAATATCAGAATCTGAATCATTAGAAATCTCTTCAGTCTTGGACCGTTTTTCAACAA
ACGGATCATTCTTTCTTTGCTTCTTTTCCAATGGGGGCTTTTGCCATTTTTTTCCTCTTTTCTT
ATTAAGCACAACGGGCGCCATTAAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 23682541-23682542(-)
Potential amino acid sequence MAPVVLNKKRGKKWQKPPLEKKQRKNDPFVEKRSKTEEISNDSDSDIENEEVKDPQEFEDEGEE
SGSDTGSELLSDGDDPLADDFLRGSDDEEKGRDSDSGSDSDSDSDSDVSDIEKKSRAIDEERAR
EKEEALEEMQLNIREESDEFRLPTKEEIEEEKQQPPDLPNLQRRIKEIVRVLSNFKDLSQKGTS
RKEYVQQLKLDLGSYYGYNEFLIGALVEMFPPVELMELIESFEKPRPICLRTNTLKTRRRDLAD
VLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERVID
MAAAPGGKTTYIAALMKNTGLIYANEMKASRLKSLTANLHRMGVTNTIVCNYDGNELPKVLGLN
TVDRVLLDAPCSGTGVISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYST
CSIMVTEVGWMCLQISSSFSLTVIKLIRILTVDYLLQNEAVIDYALKKRDVKLVPCGLDFGRQG
FVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description playing an important role in the early flowering process
Other Information
References Zeng et al., 2018