Detail information of Os02g0668900_circ_ag.1


General Information
CircRNA Name Os02g0668900_circ_ag.1
ID in PlantcircBase osa_circ_041049
Alias NA
Organism Oryza sativa
Position chr2: 27157850-27162547  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method CIRI-long
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os02g0669000_circ_g.1
Support reads NA
Tissues root
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGCCGTTGTACCCGTTGCTGAACCGGCCGGTGGGCCGCGACGTGGGGAAGTCAATGCCGTTGTG
CGGGAAGTTTGCCCGCGGCACGGCGGCGCCGGTCAGgtagttgttgttgcccacgtcaaccgtc
gagtcgccgaacacgaagaccgcgggggcaagctgtgtcgcctccgccgcgaccccaagcaagc
acaaagcc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 132
Transcript exons: 27157850-27157874,27162441-27162547
GTAGTTGTTGTTGCCCACGTCAACCAAGTCGACGCCGTTGTACCCGTTGCTGAACCGGCCGGTG
GGCCGCGACGTGGGGAAGTCAATGCCGTTGTGCGGGAAGTTTGCCCGCGGCACGGCGGCGCCGG
TCAG

Genomic sequence GTAGTTGTTGTTGCCCACGTCAACCGTCGAGTCGCCGAACACGAAGACCGCGGGGGCAAGCTGT
GTCGCCTCCGCCGCGACCCCAAGCAAGCACAAAGCCACCAGCACGTATGAGAAACTATGGCTGC
CCATTGGCACACCTGCTCTCTGCTCTCTGCTCTCCTCAGCTTCGGGTGATGGATGCTTCAGCCT
TTGTGACCGTAGATATATATACAAGAATATGCACCAGAAAGAAATATACTGTCGATTCTCGAAT
ATGATCACCAAAGCACCAACTTGTTAATTCAATTGCCGTCCACGTCCATTCTGTATTGCTGTTC
ATTCTCTAGCGCAATCAAACAAACTGGTGTTTTCACCCTCTGAAGAATTCCATTTGGCCTGCAG
ATCGGTAACCTGGAGTGGCAGTGGTGAAGAGCCGAGACGGCGACTTCAGGACAGATACACAACT
GGCGCAAGCTGAGGACATACCAACTGGGACCAAGAACGGCATGGCCGGCATATGTGTATGTACC
TACATGTTTAGAGTTTGTATTCCGATTTGGCACCAAGTAAGCAGCTGCGATGTCCTTGGCTCAT
CCGCTCCAGGCTCAAATTATCCCGACTTGGGAACACAAACACCGCAAATACCAACAAGGGCAAC
AATAATAACGGAGATGACATTTTGGTATGTGTATCCAAACTACACCACCGCCTAAAGCACAAGC
CACTGATGAACACAGCCCAGCATATCCTACGCACCAATATCACCAGACAAACAGACACATAGTC
GGCGACGTACAACAATTAGTAGTACTACGTTACACGGTGACACTGCCACGCTCTAGCTAGTGCT
GGTCATCCACCAGCTGCCTGAAATTTATCGGCGCAGCGAAGCGGACCGAGCCGTTGTATATGGC
CGCGGCGGCGATCTTGGACGTGGCGTGCGTCGGGTGCAGCAGGTCCCAGAAGAGGTAGTCGTGC
CGGTTGTCGCACAGCGTGGCGTTCGGCGTGCACCCGGACTCGCCGTTGAACTTGCCGGAGCCGC
AGCAAGCCGTCGTGACCTCCTTGAATCCTGCACACCAATGCCGTGTCACGAAACTCTGAACCTT
GCGTTGGTCAGAAATCCGAAACTGAAGCGTAGAATGTTCAGATACCGAGTCGTTGGGGATGCTT
CATGATGCTTTGCACCACGGCATGGGAGCTCCCGATGGAGTACTTGAAGCCGCTGAAGCTCACG
CTGAGGCCGTGCATGGCGTCCTTGACTCCCTTGTTCAACCCACGGGCCAGCTCGTTGAGGACGT
CGATGCAAGCGCCCAGCGGTTGCAGGCTTCTCGGGTAGGGGCAGCACCCGATCGGCGGGACGTC
GATCACGGCGAACTTCCTCGCCCCGAGAACGTACAGATCCTGCCGCGCTCACGCGTCAACTTTC
AGTTAGATTCTTTGTGTTTCTTCGCCGTAAAATTGTGTGATGAGAGACAAGCGAAAGGTGGTTT
TACCTTGACATGATTTGTGTAGAGCGATACGAGATTGGTGACGAACCGCTGCATCTCCGCGGAC
GACGGCGTGCTGTTCGCGGAGAAGAAGGCGAAGATGTCGTTGCCGCCGGTGCTGATCAGGAACA
GGGATCTCGACAGCACGGTGTCAGCGGCTTGCTGGCTGATGCGTGCTGAGATGTTGCGTTGCAC
GGCGGCGAATTGCTGCACTTGCTTGCTCATTGGGATGATGGATTGACCCTGCACACACGTGTTT
CGTCGTCATCAGCCGGTGTTCAGCGAAAAATCGTGCAGTGGCTTTGGGTTTATGCCGACGTGCT
TACTGTTGAGTCGAGAATGCCTGATCCTGCAGAGGCAAAGTTTGTTCCCTGGAGCCCCCTGAAC
AATGGGTTGCTGGTTTTGTTAGCCACGGCGAGGAACGGTGGGGGGCTGCGCCTGAATCCCATGT
TAAGAGCTGACAGAGGTTGAAGAATATTGTGATCCTCGAGATATACAACAAAAATGCAAGCGCT
ACTCCGTGCTCGTGGCTTACACATTCCCCATAATAATACTAACTATTAGAGCAAGTTTAATAGT
ATAGCCAACTACTAGCTTCAATTTATTTATAGCCAATCTAATAGCTCATTCATACAATAGTTAC
TTATAAGTATATACTACACCATTAATATATGGTCCCACCTCTCATATGCACAATGTATTATAGT
CCATGCTGCAACTGGCTACAAGTTTATAGCCCGTCTTCTTTATCTCTCTTCTCTTCTCTTCTCC
ATATGTGCTTACAACTGACTTGTACCCTGCTATTGTACTCGCTCTTACTACTATAGAAGCAATG
ATCCCGATAAAGCCTAACTAACATGAAACCATTATTCATCCATATGTCAAACCTTTACTGATCA
ATCTCTAACTGTTGGAGAAGCATTATAGATTGGAATTCGATATTTAACCATTCCTGATCGGAAA
AGTTAGCGACATGTAAGCAATGGTTCTCAGCTGAGAAACATTACATATCAGGCAAGAAGAGTAC
ATGACGAAAACACCTTCCTTCTCCCTCTAGGCCACAACACCATCCTTCTATTTAATGCATGGCC
AAGGCCCTTCTTGGTCTCTTCCATGGCCAATGAGCCTAGGTCCGCCATGCTTCTTGCCCTACCC
TCCCCACCAGTGACCAAACCCCTCATGTCAAAATATATAATGAACGACATACGCTTTGAGAAAG
TCCTTTTAGCACCTAGGCTAGCCACCGCAGGTTTGGTGAGGAAAACAATACCATGAGAAGAAAA
TATAGTACGCATCGCGAAAACGATTATGCTACAGACGCGCTAAGCGCAACTACATTTAGATGTA
GAAAAACCGCATCTAGACAACATAAAAAAAAGGAAAAACACCTATAATATTATTGTAATAGGAT
CTTCGAGATCGACTCGGAACAAAGCGAAATGTGTGTGTATTGTATTCATCATACCTGAAATCTT
AAGATGCTATCACATTGGAAAATATATATATATATATATAATAGTTACAAATATTAATTTTATT
ATCGATGTTGATGTTTCGCGTACGATTAAATCTTTATTTTCTTTTATAAGGCATTTGCCAGCAA
AAAATGTATTTGAATTTTTCAAATACGTGCGCTGCTCACATTATCGTATTTTGGCATTATCTCC
CAATCTCCATCCCAAACAGTCCCAACGCTTAAAAAGGCGATCGCATGACCTCGATGTTGGACCG
TACGTCAGATCGTGTCTGCTGTAGATTTGTCATGTGTGCCGTAGATTTTGGTACCAATTCGGAC
ATGCAATGAGTGCGTGGTGGCCCGGATCAAGGCTAGTACATGCAAGCGGGTCAGCCATTTATGT
GCGACAAGCGCCAAGTCTCGAGTGATCGGTCCATTCAGCCGCGCCCGCCTGCCAACAGCCGGAC
ACTGCCACTCTTTGCAAGCATCGCTTCCCAAAGCCTGTGTGCCTGCGCCCCGTGCGGAAGTGGA
GCAGCAGCGAATTAAATTTGAAAAATACTGTTCATTCAATTTTATTTTTAAAAATATTTAGGAT
GTAATTTATTTTTATAGAAATATACAGTCGATCTCATACAACCGAAAATAAAAATAATATAGGG
GTGACATCAACGACGGTATCGTGGGGCGACCGCACGACCGCGCGCTGTCGCAGGAATGACGAGC
GGTCTCGCTCATGCAGAGAGCGACACCATCCCAAACTCCATTTGGTTAGTGACTAATGATCTAA
TTAACTATTTAACTAATAATAATTAATGATTACTTAATAATTGCTAATCATAATAATTAATCAC
TAATTAACCATTTTGAAATCTGGTATCGTTCTTTCATTTCGCAAGACCGCGCAGTCTCGCGCGA
TACCGCCCGCGAAGTCGCACCACCTCACATTCGCATAATGATTGTGCAAGATCAACGGTATAAT
TTTTTTAAAAAATAAATCTCGAATATTTCTAAAAATAAAATGAATTAACAATATATTTTCAAAT
TTAATTCGGGCAGCAACGAGCCAACTATCGATTTAAGCATAGGCGACCTCTGGAATGTGTGCGC
CACAGTGGCACACTGCCCTGGCGTTGCGCACTTCACAGTTCTGAAGTATGGGGTTCTTCTTCAA
AACATTTTTTATGTTCTATTTACTCCCTCTCAAAATATTGTTATATTAAGATAAGATATGATCC
ATAAAACAAAAACAAATCTAAACATACTCTCCGTAGTTTTTTTTTTTACAAAGGTAGTATGGCA
CAACCTTTGTTGGTTTTTTTTGGGACGGAGGGAGTATGCGACAATCTCTCCGTTTTCAAAGCAA
TTTCCACTTCTTGCCTTCGGTAATTGGACCGCGGAAATAGTATAGAGACGAAGACTTAATCGTC
TCCAGTCTTCACCCCTACTCAACTCTAGCACCGTTACAAAACTTGCAATGCCGAAGTTGACAAA
AAACATGCAGAAAAAACGAAACAATCACCGGCTATATACGTGGTTGTCAGATATGCAACGATGC
CAGCCGCTACTATACCGCGAAGTGCCGAAGTATACTCGCATCGCATGGCAAGCAGAGTCGCGAG
GCAATACAGCACAGGAAAGACGGGCGGCGAAGCTGTACGTACCCAAGAAGTCGACGCCGTTGTA
CCCGTTGCTGAACCGGCCGGTGGGCCGCGACGTGGGGAAGTCAATGCCGTTGTGCGGGAAGTTT
GCCCGCGGCACGGCGGCGCCGGTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.247839655
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study