Detail information of Csa3G104350_circ_g.3


General Information
CircRNA Name Csa3G104350_circ_g.3
ID in PlantcircBase csa_circ_001418
Alias Chr3:5217541_5222114
Organism Cucumis sativus
Position chrChr3: 5217541-5222114  JBrowse»
Reference genome Cucumis sativus v1.5
Type   e-circRNA
Identification method CIRI2
Parent gene Csa3G104350
Parent gene annotation NA
Parent gene strand -
Alternative splicing Csa3G104350_circ_g.1 Csa3G104350_circ_g.2
Support reads NA
Tissues leaf,root
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered Csa3G104350.1:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACGTCATAGTAGGAAACAATTACCTTTAGATCCGACAGATCTGAACACCTTCCAAGTCCACCT
GGTAGTTCCTGAAGGTGATTGCTTGAACAGTCAAATctatttctgggggcagtccactcaatga
attgtttgaaaggtctaggaccaagagatgtaacttgcatgcctcaactggatactctttcaac
tgcaaata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTATTTCTGGGGGCAGTCCACTCAATGAATTGTTTGAAAGGTCTAGGACCAAGAGATGTAACTT
GCATGCCTCAACTGGATACTCTTTCAACTGCAAATAAGGAGGCATGTTCACTAGAAACCCAAGT
ATTACCAAAGTAGTTAAGAGTATTCATTTAATGATGTGTAAAGATAAAAAATACAATTTACATG
TACAATATTAGATGGTAAATACATATGAAAAACCAACTTCTCCTGAGCAAACAAATAAAAATAA
AAATAAAGTACTATTCTCCGTCTATGCAAGATTTGCTGATACTTTTACTCAATATTATATGGAT
TATTATGTACTGAATTGCAAGCTTGTAGCATACATTTTCTCCATTGGGGAAAATTATTTTATTT
CATGTTCATCTAAATTTCTAGGCTGGAATTTGGTAGTTCATGAGAAAAATGTTGATCAAAACTC
AATTCTGAGGTTGTAGTTAGAAATTAGGTCAGAAATTATACTGCAAATTAAAATAATATAGAAA
GTTACAGTTCATACTAAGAATTTGAGAGATTCTCCAAAATTAATCCCAAAATATGTCTGTCTCC
AACTCCCCCAATGTGATATTCATAACAACTCCACTAACAAGCTGAAAACTCATGTCCCAAGTAG
CCTAATAATGTTCCTAACACTACTCTGCTTCAAGAACACACTTCCTCAAGGGTTGTTGGTCTTT
TAGTCAATTTTATTTTAAATAATTCTGTTTGTTTTATTTCTTTTTTTCTTTTATAGAACCCACT
GCCTAAAAATTATTCTAAACCTGATCTGCACATTGTATGTAAACTCCTTCCTTCCAGTTTGGCT
TTCTTTTCGTTTAAATTAGTCCAGGCCCATTACCATATGGTCCCTATCTAATTCCAGAAGCTTC
TCCACCCTTGAAGTTGTGAAGTACATGAGTGTACGGCTTCCGCAGTATCCTCTTCTTTCTTTCG
AGAGATTTCTGTGGAGGATAGTGATTTTTTATGGTAACCCTTAAGAGCCCGCTACCAGCTATTG
CCCCTTGCTTATTGTCTTTACATCTTCCACGGTACCCTCTTCTTTCTTTCGAGAGATTTCTTTT
CTTTCCTAACACCCTTTCTTTAATAATAAGGTAAGGGGAGACTTCCACCAGGTCAAATTCTCTC
TTTCGTAAAGAACAAATAATAGAAAAATGATTAGGGTCAGACTTGGTTCAGGGATTGGAAGATG
TTCGCACATAAGCAAGACCTGCTAAATCACCCACGGCAACCGAAAGAGCTGGGACCATGGAGTG
GGCCCCAAGATAGAATTCGGGGACACTTCGAAACAGGACTCTAGTTTATGATTTAGCTCCTCAA
CCCCATCCTGCCATTATCAAGTTATCAATAACTCATGTCTCTTCCACACGTTGAAGACATTTAA
GCCAGCAAGCTTTCACCCTCTTTACTATATTTTCACCTCCACCATATGCCAGAATCTTCTCTTT
CACTTCTTCATAGGTATTTGTCTCTCTTGTGCCATTAGGTTTCGGGGATTCATTGATTAGTAAA
CCTCCAGTACTGGAACCTTTTACCTTCATGCTTAGACATTTGTGTACTCCCTTGGATAGTTTTC
TTTGATTCTTCTGGGGTATACCATATACGTATATCCCACATGAATTTCTTCTGGCATAACAATA
AACAATAAATTCTCAATTGTAGACATACCAATTTGACTTGAGTAACTACTTTAGCCCTTGAATT
ACATCCTTCCTCCATTTTTTATTTTCTATATGAATCCTTGAGCTAGTTTGCAATCAATTTCTCA
TATATATATATTAAATCTCATCATCTCCCACAGCTCCTCCAAATACCTATACTACAATTCCTCT
CAAAACACACTCCCCATGAAAGCACAAGCTAAAGAAGTCTTCCCTAGCAAAACAACTAGTAACG
TCTTTCTTTCTTCCTTTGATAGTAGAAACCCCAATCTAGAAATTGGAAAGTTCGAAAATTGAAA
TTGTGTTATAATATCAAGAAAAACTATAATAGCAAATTCCAATAGCTATTAGTGGTTTCAAAGG
CAACATTTTTCCTATCAGATAAACATGGAGTTCCATCTCAAAAATAATTGGCAATGAGAAGAAT
AACCCACTTATCTCATAAAGATTGGAAGGTCTCTTCATCTCCCTGGTGTGAGATCATCAGCATG
ACCCTCAAGATGGTGTCTTTCTGGGGTTCACCAGTCTTGGGTATCTTTTCTTTTCTTCCTTTAT
TTGAACCAAATGCCAATTTTAGCATTTTTATCTCCGATACCATATTAGTGTATCTCGTAACAAT
TGCGACATATATTCATCTTTTGATGTGACATCCTCGACACTTCTCCTTGACTAATTCCAAGGTA
TGTCCATCTCCTACCCCTCCAATTTACTCTATTTATTATAACCACCTTCACTATTCAATATGCC
CCTCATAAACTAACAATACTTCTGAAAAATATTCATGACTGCTTGGCTGTAAAATACTATTCCT
CCTTCATATATCATAAAATAGGTATCTATTTATTATGTTACATCACCAATCAAGAATTGTGGAA
GATATTGCTCCAAATCCACACTAATTTATGGGCTCCAAAAATGAATTTGAACCCCCCTTCTTTT
TCACTTTCAAACTAAGGAATTGGAGAACTCCATGCTGTCTTGTATGTAACTTATTCACACTAAT
CATATCTAATGGAAAGTATGCCCATAACCAAAGACCACGGTGCTGAATTTCATGGCCATTTCAT
TTCATTAATAGAGTGAGTTATCTGAGCCTAGCAAAAGGTTATGCATTAGGCCTTTTGAAGTTAA
ATACTCGTAATTTAAGATAATGAACCTTTTTTTGGTTTACAGCACTTACAAATTTTTATAGTAC
TAATTTAGAACATAAAATTTGTTGAGCGGAAAACATATATAAAATTTGAAAAAGAACAAATGCG
AGATAGAAAAATGAATTGTCATCCAAAATGTTGCAAGGATTTTTGCGATTTCCTTTTATGAGCA
CATAATTTCAAGTTTCATATTTCTCAATGAAAGTTCGGTTTCTTTAAACAAAAAAGTTACGAAG
TTTAAAAGATCATGCCATACTGCAAATATTTTATATGCTGAGCAATGGATGAGACTGAAGAAAT
CAAGGTAGAATTTATTTATGTTTGAATGCTTTGCTCATTTATCCATGGTTTAGCCTAGCCAACA
TCTCAAAGAGCAGTAAAGTTTCCTCCAACTGTGTTCCAATATATTATAGTTTCCCTATTCTCTA
TTCTCCATTTACAGAAATGAGGAAAAGATATAGGTAAGAACTATTGAAGATGAACAGACTACCT
GGTTTGAGTGAAGATCTAAAGTCCCTAAATGAGAAAGTGCCCCAATCTCCACTGGTAGCGTACT
TACTGAATTATTCCTAGAATTTGAAATCACATTACTTAATCAAAATAAAATTTTAAAAGAAGAG
AAGGAACAAACCATAGAAACCCATTACAGTCTAAACCAAGTGTAAGTTTGTAAGATTATGGATT
GAATACTACCCCATATATAACTCTGCAAGCGCACAGCAATCCTTTATTGAAGGTGGAATTGATG
AAATTTCTGCAAAGAGGACATATTTATTATATTTAGAAAGCCTTGCTAAAACATGAAAGAAAAA
GATCAAATTATTTGATGTAAAGGAGATTAAGTGAGCTAATCAGCCAAAAAACTCACTGTTTTGG
AATACATTTAAACGAATGAGGCGTAATAGGCTACCAATATTCTCAGGTAACTCATTAAGCAAAT
TCTTCGCTGCAAATATTGAATTGTAAGATATATTTCTCTAATCTAGTAACGCAAAATATAAATG
ATTCAACAATATCAGATGAATTAGTCAAGACTTCAAAATTACACGCATTAAGTTCAGTGAGCAG
AGTCCATGATGCAATCAAATTTTTGGATATCACCTTTAGTTTGTTCCCCTGCCAAACAAAGAGG
TTACATTAGAAATGAATTACTATTTAGATTACTAAACCAACCCGATTAAAATCAATATTCTCTA
TCCTTACCTCCATATCAAGCTTCGTCAATTTTGAGCAGTTCGCAAGTTCAACAGGCAAGCTGGA
AATGGAGTTGTTTGATGCCTGAGGAAGAGTACAATAAGAAACCTTGCTTGATACATTATGCTAA
AACAAAGTGCCTTCTTATCAATAATTATTAGTTGGTAAATACCAAACCCCCCAACTGACAAAAT
CAACCTAGTAACCTTCACAGCAACTGAGGGCAAATTTAGCATAGATGAGAGAATAGGCAACATT
TAACATCTAGGATATCAGTAAGGATAAACTAAACGTAAGACGGAAAAAGAAAACGTGTCTCTTA
ATCCATTGTACTTGAGGGAAGATCTTATAAAGTTACTATACTAAGAGATGGAAAGGGCCACACA
AGGTCAGTCAAGGAAGACTGCTCAAGTAGCAAACCATTTCGGGATGCGAAAGTGAGTGCACGTC
ATAGTAGGAAACAATTACCTTTAGATCCGACAGATCTGAACACCTTCCAAGTCCACCTGGTAGT
TCCTGAAGGTGATTGCTTGAACAGTCAAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.089574494
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to salt stress in root
Other Information
References Zhu et al., 2019