Detail information of Zm00001d017840_circ_igg.1


General Information
CircRNA Name Zm00001d017840_circ_igg.1
ID in PlantcircBase zma_circ_008794
Alias zma_circ_0001987
Organism Zea mays
Position chr5: 208461213-208465625  JBrowse»
Reference genome AGPv4.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Zm00001d017840_circ_g.1
Support reads NA
Tissues leaf, root
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGGCGGACACCGCGCCTCACCTCTCTCTCCCCTTTTCTCCTGTCCCGGAGAGAAAAACGAGCGG
TGGTGTCTGCAGGATTTGCAGGGAGGAGGAGGGAGCttcttgttgtaccagaagacgcccttgc
ggtcctcgggctcgacgtagatgcactccctggcctcgcgccaggtcgccttggcaacaggggt
cgggtcga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTCTTGTTGTACCAGAAGACGCCCTTGCGGTCCTCGGGCTCGACGTAGATGCACTCCCTGGCCT
CGCGCCAGGTCGCCTTGGCAACAGGGGTCGGGTCGAAGTGGTAGTAGTCCCCGAGGATGGGCCT
GATCGCCTTGGTGGCCTCCATGGCGTGGTAGTGCGGCATGGTGGAGAAGAGGTGGTGCGCGACG
TGCGTGTCCGTGATGTTGTGGAACACGCGGTTGAGGATGCCGTAGTCGCGGTCCATGGTGGCCA
GCGCGCCGCGCAGCCAGTCCCACTCGCTCGAGTCGTAGTGGGGGAGCGACGGGTGGGTGTGCTG
CAGGTAGGTGATGAGCACCAGCCACGCGTTCACGATCAGCAGCGGCACGGCGTACACGCGCACC
ACCCACCAGACCCCGAACGCCGCCGCCAGCTTGTACAGCCCGAACGCCACGGCCACGACGCCGG
CGTCCGAGACGAAGATCTGGGCGCGCTCCCGGTCGTTGTAGATGGGGCCGTAGGGGTCGAAGTG
GCAGGCGAAGCGCGGGTACGGCCGCCCCGACGCGTTGGTCGCCAGGTACAGCGGCCACCCGAGG
GTGAGCTGCACCACGATGTGCACCACCCGGCCGACCGGGTTGTTGTACACGTACGGGGTGTACC
ACGGCAGCGCCTCCTTCTTCTTGGGCACGAACACCTCGTCGCGCTCCAGGGACCCCGTGTTGGA
GTGGTGGCGCCGGTGGCTGTACTTCCACGAGAAGTAGGGCACCATGAGCGACGAGTGCAGCACC
AGGCCGACCACGTCGTCCAGGAGCGAGTAGTCCGAGAAGGCGTGGTGGCCGCACTCGTGCGCGA
TGACCCACACGCCGGTGCACACGCACCCCTGCGCGATCCAGTACAGCGGCCAGGCGGCGTAGCG
GAGCGGGCTTGGGAGCGCCGGTATGATGGCCAGCGCGAAGTAGAGGAGCGCCGCGGCGATCACC
AGGTCGTGGACCACGTACGAGAAGGACTTGAGCACCGAGCGCTCGAAGCAGTGTGGCGGGATGG
CCTTCTTGATCTGACCCAGAGTGAACGGAGGCTTCTCCACCGGCGACCGCTGCATCGCGGCGCC
ACCGGTAGCTCGGGCGAGCTGCTCCTGCTTCTCCCGCTCCTTCTCGGTCATCCTGCCGCCGGCA
CCCATCTTGCTCCTGACTGACACAAACGAGGTAGTACGCTACAGTAAGATCAAGCGAGCGTGAA
TCAAGAACAACATTACAGTGATCTCATCCCATCAAAAAAGCTGTCACGTGAACCACGAGAAAGG
CCACCAATCAACCAAAGTAAAACAGATCACGGCACGAGGGGGCGTCTCCCAGGAAGGTGGCAAA
TATGCCGTGCATGATCGCATTTACTTTCTTGCCTAAACACGATCCAACTACCACGCCACAGCAA
GTTGGGGATCACAGCATGTGCGAGCCCAAACCAGCAATTCTGATTACCACCACACAGAACTAAT
AAAATGCAGACTTTACAGCAAGACCAAGGATGGTACAAAACCCTACGGCAAATCTACATTAAAT
AAGCAGAAAACAGATTAAGGTCCTGTCACTTGTGATGTTACATTGAACGAACTGGTCCAACAAC
CCCCTTGAGAAACATGTGATGTACTGCATGCAATTGGACGGTGATTTGTGAAAGGGACTTCTGG
ACCAATGGAAAGCAGCAGGCAGGAGAGACTAACAAGCGGCAGCGCCAAGAACGTGCGTTGAGGT
GATTCAGCGGAAGGAAAAATAAATGGTAGTACTACCATATATGGTCAAATCTAAGCTATCCAAT
AGCCATACAGAGCAAGGCAATCTTGCGTCATCGGTAGAAGTGGTCAATTTTGACAAGCTAGCAA
GCATGAGCTCCCAAGTCATCTTTTCTACATGCAAACCCACCTACCAGTCCAGAGCCTAGAGGCA
CACCATATTTCAAAAAAAAATCAGCGTAAGATGGCAGGTGCTCTGCCTTGTGCATTGAAGGTGG
TGGTAAATCAGTTCGGTTTACGATAAAGCCTAGTGAAGCCCCATATAGCAACGTAAAAGATGCA
CGGCGCATTAGTATAAATCTTAGAAAAGATCCGGTTTTTCATTGTCTGTTTGCTTCATCTTGTT
ACCAAAATTTGGGCGTTTATCAGTGATGCCAAAACTTTGGTAGTGCGGCATCCAGTATGGTATG
GTATGGCTCGAAGCCGCACATGTATAGATGGCCAAAAAGCACGAGGCCCGTGAGCCCGGCACGA
AGCCCGCTTTTTGGGCCCGGTCCGAGCCCAGCACGGTAGAATAAACGGGCGGGCTTGGACAGGA
AACTAGGCACGGCGGGCTAGCCCGGCACGGCCCGTTTACCTCTAAGCCCGTTAAGCCCGTTTTT
TTTACACTAAAATGTGCTTACCGGCCCGTTTAGCCCGCTTTTTGGCCCGTTTTTTCGTGCTAAA
CGGGCCGGCCCGGCCCGTTTAGGCCCGCTGCGGGCCGGGCTTGGACAGAAACTTAAGCCCGCTG
GCACAGCAGGCCCGGCCCGGTTTTGGCCGGGCTTCACCGGGCCCGGGCCGGGCCGGGCCGGGCC
GGCCCGTTTGGCCATCTCTACGCACATGTGCTCGCACGAGGTGGAATCGGATGTTATCTGTCTC
CCTTGGGGCTTGGCCGAAATGACACAAGCGTGTCCTGTCGACCAGCCAACCATGGCGCCCACAG
ATGGAGACAGAAACCAGATCCGTCGAAAGAGATGCTTGGCCGCCGTGCCGATACTGTGCATTAA
TTCTGACAAGACAAGGGCCGCCCGTCTAAATTGTCTCCCTAACTTTCTGATCGGACGGCGGGGA
GAGCCAAACAAACAGGGAAGAAATGGCACATGCGACTCCATGCCATGGCCATAGCAGTAGCAGC
AATTTGCATCGGACAGCGAGTTGCAGCCGACCACGCCAAGGTGAAGGACGGGTCACTCTGGTCA
CCAGAGGGGCCAACTGCACCCAGATCTGCTGGTCCACGCCTCTCGACACTTGTCCGAGTTATTC
TACGGCTGGATAATCGTGTCGAAAAATATCTGTGCACCGGTGTTGCATGCCATCATGTGGGGCC
TAGAATTCGGTGCCGGGCTTGCAGGCTGCGACCCCCGCGGCGTCTTGTACCGTTGCGCAGACAC
AGCTGCAGAGCCCTGACATGCCGCCGGCCCATGCCGAAGGTGAGGCGGAGTAGGTGAAATCTTT
TTCTGTCTCGGTTTTTGACTGTACGTGGCCACGTGGGAGGAGACAGTCGCCACCGTCCAAAATC
CCAAGGCATCGGACGGTAGCGCGTCGTTCATCACGATGCCGTTTTCTAGGTCAAGCAGACAAGA
CCCACGGAACGAGCTCCCCATCCCCGCTGCCGCCGCCGGCGGCGGCGGCTTCCTGCCCTCGACC
TCGAGCGTGTGATGACTGGGATTGAAAGGAACGCGCTCTATTTTTTTCTATCCAAATTCCTAGA
AAAGCATATACGGTTTCCCATCTGGACAAGTAGATATTTTTTTATGTGTGACCAAAGCAGAACG
AGTTGCTTCCTAGACACAGCAATTGCTGGAGCTAAAAGGTCAGTCAATTCTTGGGTGCAATTGT
CGCCAACTCCGTGCTTAGCTAATAGTACCAGTAAAAAAAATTAGAAGCTAGAACAACGGAGCAG
TTGGCCATCATGGGGAGGGCGCAGGCGCAGCGATGGCTGTCATGGAGGGACCGAACGCCTAAAG
AAAGAGGCTAGGCCTGTAAAGGTTGCAGCTTTTACCCACAAGATTGACGGGAGCTGCGAAAAGT
TCGTGGCCAAAAGTGGCATGTCATGTTCCCGAAACGAGTGGGCAGGAGGGGGCAGAGATCATGG
ATCCATTGCACGGGCAAAATATCTGATCGGCACCACTCGCTGAATCCTACAGATCTGATGAGAT
GGGAAACAAGCGCGCTTTGCCAGGACTAATCTGGGCAAATCCACATCGGCAGCGCAAGGCCTCT
GCGGATGCCCGCCGGTGAGATCGATGTCAAGCTCGACCGGCGGGGGCTACGGCGAGTTCGGCCG
CATCCCATTACTTTCTCCCAGACCCAACGCTACGGATCGACGACACGAGCTCGGCCGGACCCGC
CCCGCCGGCGACGGCCGGTCACGAGCCCGCTACGGCGAACTGTCACCCTGCTGCCGAGCTCAGC
AACCCAAAACCGAAACTCCGGTCGATTCCTCATCAATCCATTCAGAACAATCTATGAAACACTG
GCAGGGGGGATCATCCAGAATAGAGGAAGGCTAATGCGGGTACCTGAGACTGAGGAGGTCGTAA
CAGCTGCGTCGGGGCAGAGCAGATCGGGCGGACACCGCGCCTCACCTCTCTCTCCCCTTTTCTC
CTGTCCCGGAGAGAAAAACGAGCGGTGGTGTCTGCAGGATTTGCAGGGAGGAGGAGGGAGC
Conservation Information
Conserved circRNAs NA
PMCS 0.086793729
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b