Detail information of Os11g0246900_circ_g.1


General Information
CircRNA Name Os11g0246900_circ_g.1
ID in PlantcircBase osa_circ_008973
Alias NA
Organism Oryza sativa
Position chr11: 7932950-7933382  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os11g0246900
Parent gene annotation Ankyrin repeat containing protein. (Os11t0246900-01);Similar to
predicted protein. (Os11t0246900-02)
Parent gene strand +
Alternative splicing Os11g0246900_circ_g.2
Support reads 1
Tissues shoot, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0246900-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTAGAGTTGTTAGTAGAGGGTGGTGCCGATAATGTGAACCAGTGCTTTCTTGAGGCTGCTCGC
TATGGAAGCACTGAACTCGTGCGCATCTTACTTCAGgttgaacgagcgccttcaagaatcccat
ggcgacgaggtattgaaggcagaagcaagcgcaaaggtgcacaagttcacagagtgggctctaa
agtgtatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTGAACGAGCGCCTTCAAGAATCCCATGGCGACGAGGTATTGAAGGCAGAAGCAAGCGCAAAG
GTGCACAAGTTCACAGAGTGGGCTCTAAAGTGTATCGGGCTGCATTCGCGTGTGCGGGAGAACA
AGGGCAGAGGAAACCATGGCACGATCATTGAGGTCCAACTTCAGCTGTCTGCTTTCAAGACATT
TCTGGATCTTGCCGATAATGATCTTACTGGGAAGGATTTCACGGAGGCCTTTGACGCGGCATGT
TTTCCTCTTACACTCTTCTCAAACACCTTTGACCAAGGTTGGGCATCAGGTATCTCGGCAGCTG
CAATACAAGGACTCTTAGAGTTGTTAGTAGAGGGTGGTGCCGATAATGTGAACCAGTGCTTTCT
TGAGGCTGCTCGCTATGGAAGCACTGAACTCGTGCGCATCTTACTTCAG
Conservation Information
Conserved circRNAs osi_circ_009454
PMCS 0.343145727
Functional Information
Coding potential Y
Potential coding position 7933349-7933105(+)
7932979-7933215(-)
Potential amino acid sequence MEALNSCASYFRLNERLQESHGDEVLKAEASAKVHKFTEWALKCIGLHSRVRENKGRGNHGTII
EVQLQLSAFKTFLDLADNDLTGKDFTEAFDAACFPLTLFSNTFDQGWASGISAAAIQGLLELLV
EGGADNVNQCFLEAARYGSTELVRILLQVERAPSRIPWRRGIEGRSKRKGAQVHRVGSKVYRAA
FACAGEQGQRKPWHDH*(+)
MGFLKALVQPEVRCARVQCFHSEQPQESTGSHYRHHPLLTTLRVLVLQLPRYLMPNLGQRCLRR
V*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017