Detail information of BGIOSGA002378_circ_ig.1


General Information
CircRNA Name BGIOSGA002378_circ_ig.1
ID in PlantcircBase osi_circ_001813
Alias 1:3325624|3330267
Organism Oryza sativa ssp. indica
Position chr1: 3325624-3330267  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA002377_circ_igg.1 BGIOSGA002808_circ_ig.1
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGATGCATACCTCATATTTGTTGTTAGCTAATCTTCAACAGAGGAGCCTCCATAAGACATTCAG
GACAGAAATGTAGCAAACGGGCAGGCATGCATAATCcttggtccgtgcttcagaagaccgcaat
ggcggaggattgacgatgagggcgaccggtggcagcgacgacgacggcaaggctgctgttgctg
gcgtatcg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGGTCCGTGCTTCAGAAGACCGCAATGGCGGAGGATTGACGATGAGGGCGACCGGTGGCAGC
GACGACGACGGCAAGGCTGCTGTTGCTGGCGTATCGTCCGGTGCTCCTCGTCCATGTCAACAGC
TACCATATGTCAAAAACTACGTGACCCACTTTACTGATCATCGAGTATGGCGGACAGCACACAC
CGTGCTCTGCACTTAACCCTGACCACTTGCATTTGTTGGAAAGAGCAGCACAATGCACTCGTAA
AAAGCCCCGAGTCCTGACAGATTAGGTCAAGTCAACCAGTCCCAGCCAAGTAATCATTGAACAG
TAGACCATTCGGTCAATGAAGTCAAGCAAACACTGGAGATGTCCAAATAGGATCATAGGATAGG
AGCAATATCTCAGCCTGTAAGCTGATGTTATGCTCCAAAGACCCTCCCTCCTCTCTCTCTCACA
GACGGAACCAAAGAAAGAAACCACATGAGGCTTCTTGTATTACTGTCCCTCATCTCCGTCCTGA
CGATCGCCGGTGGCAGCACCAATGAGGCCACGCTGCTCGCTTTCAAGGCGGGGCTCAGCTCAAG
GACGCTCACCTCATGGAACAGCAGCACCAGCTTCTGCAACTGGGAGGGCGTCAAGTGCAGCCGC
CATAGGCCGACGAGGGTGGTGGGGCTGAGCCTGCCGTCCAGTAATCTCGCCGGAACGCTCCCTC
CTGCCATCGGAAACCTCACCTTCCTCCGGTGGCTCAACCTGAGCTCCAATGGGCTCCACGGGGA
GATTCCCCCAAGCCTCGGCCGCCTCCAGCATCTACGGATCCTCGACCTTGGAAGCAATTCGTTT
TCCGGTGCGTTCCCTGATAATCTGAGCTCCTGCATCAGCTTGATAAACCTGACCCTGGGCTATA
ACCAACTTAGTGGCCACATTCCGGTGAAGTTGGGTAACACACTGACGTGGCTCCAGAAGCTCCA
TCTTGGAAACAACAGCTTCACAGGGCCGATTCCAGCCTCGCTAGCAAACCTATCATCGCTTGAG
TTCCTAAAGTTGGACTTCAACCACCTGAAAGGCCTGATCCCGTCAAGCCTCGGAAACATCCCAA
ATCTGCAGAAGATTGTTCTTGACGGAAACAGCTCTCTGGCGAATTCCCGCCCTCCATATGAAAT
CTGTCAAAACTGACTGTTCTCCAAGTATATGAGAACAAGCTCAAAGGAAGCATTCCCGCCAACA
TTGGCGACAAATTACCTAACATGCAACACTTTGTTCTGTCTGTGAACCAGTTTAGCGGAGTCAT
CCCCTCTTCCTTATTCAATCTATCATCACTCACAGATGTATACCTTGATGGTAACAAATTCAGT
GGATTTGTGCCTCCTACCGTGGGAAGGTTGAAATCTCTTGTGCGTCTATCCTTGTCTAGCAACC
GACTTGAGGCAAATAACATGAAGGGCTGGGAATTTATAACTTCACTTGCCAACTGCAGTCAGCT
GCAACAGCTAGATATCGCAGAAAATTCTTTCATTGGGCAGCTGCCAATCTCTATTGTTAACCTG
TCGACAACACTTCAAAAGTTCTTCTTACGTGGTAATAGCGTCTCCGGGAGCATCCCCACAGACA
TTGGCAATTTGATTGGCTTGGACACGCTCGATCTAGGGTCCACTTCTTTGTCAGGAGTGATTCC
TGAGAGCATAGGGAAGCTAGCAGACTTGGCCATAATTACTCTGTACAGCACTAGATTGTCAGGC
CTCATACCGTCAGTAATTGGAAATCTTACCAATTTGAATATACTAGCCGCATACGATGCCCATT
TGGAAGGCCCAATACCTGCAACCCTTGGGAAGCTAAAGAAGCTATTTGCTCTAGATTTGTCCAT
AAACCATCTGAACGGTTCGGTCCCAAAAGAAATTTTTGAGCTGCCGTCACTTTCTTGGTTCTTA
ATCTTGTCAGATAATACTCTCTCAGGACCCATTCCATCAGAAGTTGGTACCTTGGTTAACCTAA
ACAGTATAGAACTGTCAGGAAACCAGCTATCTGATCAAATACCTGACAGTATAGGAAATTGTGA
GGTGCTGGAATACCTGCTGCTAGATAGCAACTCGTTTGAAGGAGGCATACCTCAATCTTTGACA
AAACTAAAAGGGCTCGCCATACTGAACCTAACCATGAACAAGTTTTCTGGTAGCATCCCCAATG
CCATTGGTAGCATGGGCAATCTGCAACAGCTGTGTCTAGCTCACAACAATTTGTCAGGATCAAT
CCCAGAAACCCTACAAAATTTGACACAGCTGTGGCACTTAGATGTGTCCTTCAATAATTTGCAA
GGCAAAGTACCAGATGAAGGTGCTTTCAGGAACCTTACGTATGCATCAGTTGCAGGGAACGACA
AGTTGTGTGGTGGAATACCTCGGCTTCACTTGGCTCCATGTCCAATTCCTGCTGTAAGAAAGGA
CAGAAAAGAACGGATGAAATATCTTAAAGTAGCTTTCATAACAACAGGAGCAATTCTGGTGTTA
GCTTCAGCTATTGTTCTGATTATGTTACAGCACAGGAAACTAAAAGGAAGACAAAATAGCCAAG
AGATATCTCCGGTTATAGAGGAACAATATCAGAGGATTTCATATTATGCATTATCAAGAGGAAG
CAATGAATTTTCAGAAGCAAACTTGCTTGGCAAAGGAAGATATGGTTCTGTTTATAAATGCACT
TTACAAGATGAGGGTGAACCTGTAGCCGTAAAAGTGTTCGACCTTAAACAATTAGGATCTTCAA
GGAGCTTTCAGGCTGAATGTGAGGCTTTGAGAAGAGTTCGCCATCGTTGTCTGACAAAGATCAT
CACTTGTTGTTCAAGTATTGACCCACAGGGTCAGGAGTTCAAGGCATTAGTTTTTGAGTACATG
CCCAACGGAAGCTTAGATGGTTGGCTCCATCCCACGTCAAGCAATCCCACTCCCAGCAATACAC
TGAGCCTTTCGCAGAGACTCAGCATTGTGGTTGATATCTTGGACGCACTGGATTATCTTCACAA
CAGTTGTCAGCCACCGATCATTCATTGTGACCTGAAACCAAGTAATATTCTTCTTGCAGAAGAC
ATGAGTGCAAAGGTTGGAGATTTTGGCATATCAAAAATCCTCCCCAAAAGCACAACTAGAACTC
TTCAATATTCAAAAAGCTCAATTGGAATCCGAGGTTCCATTGGATATATTGCACCAGGTAGGTC
AAAAATATTATATTTTTGTATTATATCCTACAATTTCTCCACCTCCTCCCTCATGGGTGGGGGT
TGGACTGGAACTTTGTATCTTTTACATGTCGGTAGTACGGTGAAAAACTAACTTTAACTGCAAA
TATTGTAGAGTATGGAGAAGGTTCTGCAGTAACCAGAGCAGGTGATACTTACAGCTTAGGTATA
TTGTTGCTTGAGATGTTTACTGGAAGAAGTCCCACTGATGACATTTTCAGGGATTCAATGGATC
TGCACAAGTTTGTTGCAGCTTCTTTTCTTGAGAGCGCCATGAACATAGCTGATCGAACAATCTG
GCTGCATGAAGAAGCAAATGATACAGATGAGACAAATGCAAGCACAAAAAGAAGAATTATTCAA
CAGTGTTTGGTGTCCGTTCTTAGGCTCGGCTTATCCTGCTCAAAGCAACAACCCAGAGACCGAA
TGCTGTTACCAGATGCTGCATCAGAGATTCATGCAATCAGAGATGAATATCTCAGGTCTTGGAT
GGTTGAAAATGAACAGAGCACTCTTAACTAAATGTTGAGTCGGGCAATGAACAGTAGAGCAACA
TTCATAAATATTGGGCAATATGCATATGTGTAGTATCGATGACTGTACCTGGAATAATCAGCTG
CATACAAGGTTCCATGGTTACTGGTCGTGCATTTTAGAGGTTAAATAAAGGTTACATGTGTTAT
TGCAAGAGATGTATACAGAATATAATAGAGTTGACTAATAATATTTAAGTACTGGAGTTTATAG
CTTGTTGCGCAGCACCAATAATAATTCAATACCAATTCCTAGTTACCTACAGAACCATAGCAGC
AAAATTTCCTAACTCCCTGACTCAAATACCCAGGCAACCAGTTTTCAGATTCGACATAAACAAA
GCAGCAAAAAAGATCGCATCTAAACAGTTCTAGCACAGGATACCAAATCCATGACAATTATAGA
ATAGAAGAACAATAGCCCAAACAATTAACCAAATAGGAATGAAGGATTGTTCACCCAAGAAATA
TGAGATCCATCATTTCAGTCGCTGTGGATTTGTACTAGCCACTATAAAGCTTTTTCATGAGAAA
AAGATACTAGTACATATCCACAGTAATCAGTTAAAGCTAAAGTTGTTTGGCATGGAATATTTAA
TTTGAACAAGCCAAACAGAAATTCAGGATGCTCTCCCTGTAGAACCTTAAAGATAATTGATCAC
CTCAAATAATCTCCCTGAATAGAAAATAAAAGGATTGCATTACAAGAAGTCCCACAAGAGTCCC
ATCTTCACTCTTCAGTCAGCACATCTTGCACAGAACAGAACAGCCCAAAGCAAGGTTTGATAAA
AGATGCATACCTCATATTTGTTGTTAGCTAATCTTCAACAGAGGAGCCTCCATAAGACATTCAG
GACAGAAATGTAGCAAACGGGCAGGCATGCATAATC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021