Detail information of Solyc12g082770.1_circ_ig.1


General Information
CircRNA Name Solyc12g082770.1_circ_ig.1
ID in PlantcircBase sly_circ_003594
Alias NA
Organism Solanum lycopersicum
Position chr12: 17426412-17426701  JBrowse»
Reference genome SL2.50.38
Type   ig-circRNA
Identification method Segemehl, CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues fruit
Exon boundary   No-No
Splicing signals   GT-AT
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTCCTAGTGAAATGATAAAATGTCATTCACAATGTCATTCTATCGTGTATGATTTCTAAGGGC
GATGACAACATGCCACACCCGCTGTAGTCCAACCATaatggcatacgacgcccgacgtcgttca
ccatgtgtgctgtcaaagggcgaagatggcatgtcacatccaacatcgtctgacgacgagtgct
gcccaatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AATGGCATACGACGCCCGACGTCGTTCACCATGTGTGCTGTCAAAGGGCGAAGATGGCATGTCA
CATCCAACATCGTCTGACGACGAGTGCTGCCCAATGGAAATGATGGTATGCTATGTCCGACATC
ATCTTACTATGTGAAAGGGCCATGCTGCCATGCCACGCCTGACATCATCCGATCGTGTGTGGTG
TCCTAGTGAAATGATAAAATGTCATTCACAATGTCATTCTATCGTGTATGATTTCTAAGGGCGA
TGACAACATGCCACACCCGCTGTAGTCCAACCAT
Conservation Information
Conserved circRNAs NA
PMCS 0.112068966
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tan et al., 2017