Detail information of POPTR_0001s00390_circ_g.1


General Information
CircRNA Name POPTR_0001s00390_circ_g.1
ID in PlantcircBase pop_circ_000005
Alias Chr01:9860212-9863452
Organism Populus trichocarpa
Position chr1: 297368-300608  JBrowse»
Reference genome Populus trichocarpa genome v3.0
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene POPTR_0001s00390
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues stem xylem
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered POPTR_0001s00390.1:4
POPTR_0001s00390.3:4
POPTR_0001s00390.4:4
POPTR_0001s00390.2:4
POPTR_0001s00390.5:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCCTCTGAAGGCCGGCACTGTAAACCCTTTAATCCTTTGCTAGGAGAAACTTATGAAGCTGAC
TTTCCTGATAAAGGAGTTCGTTTCTTCTCCGAAAAGatctcatcatttcgtgagagcaagtccg
atgataggcggttttatatatttacagctacaaagacacttcatctgaggactgattcaaagag
agatagag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATCTCATCATTTCGTGAGAGCAAGTCCGATGATAGGCGGTTTTATATATTTACAGCTACAAAGA
CACTTCATCTGAGGACTGATTCAAAGAGAGATAGAGTAGCCTGGATACAAGCCTTGGTCTCAAC
CCGGAGCCTCTTTCCATCAAGATCGCTAAATGATAGTCTCTCCCTTGTATCACATGATCTGTCT
ATCTCAACTGACAGGCTTAAAAAACGTTTACTTGAAGAGGGTATCAATGAGAACCTTGTAAAGG
ATTGCGAGCAGATCATGCTATCCGAGTTTTCTGAAGTACAAGGACAAGTTAAAGTTCTTTGTGA
AGAACGGTCCAATTTGCTAGACACATTAAGGCAATTGGAGGTAACTAATAACCACTAACTTTTT
TTTTTTTGGAGATATTGGTAGTGATCTTCTGTATATTTATGCTCTTTTACACATCTGAATGAAT
TGTTCTTTTTTGTTCATTGCATTATCATGTCAATTTTTAAATTGTTGTGATCGATCCTTTTCTT
GAACACAAATTATTTAATGAGAGGATGGATTCAAGTATTTGTTCGTCTTCAAGTGAAAAAAATA
CTACGGGTGGCCAAACAAATCTTCATCTTTTTAACAATACAAACATGACCCTAGCTCATGTAGA
TTAAATGTTATTGACAAGCGTATTTCTCGAGAAAATCCTTGGTTTTGTGCATCTCCAATATCTT
CATGGATCAGGTAGCAGCTTAGCATTTCCTGAGTGGTAAAAATATGTCCTACGTGCTTCTAACA
TGTACTATGCTTTCTAATCTCTTTTTGAAATTTGTTTGAAAACTTACTATTATAGTGCACGAGC
AAGAGCAGAGAGTTAATAGAACGATACATGATGATGCCGATAGGGTTTTGAATTGAAAAAAAAT
ATAATTTGCAGGTAGTTAATGCAATTTCTACTGTTCATTTGTAAAATCTGAGACTATTACAGCA
TATTGGAAAAGTGTGAATGCTTTGTAATTGATGGGAGTGCCTGGACAAAATAATTTGCTATATA
TTTCAATTTATGGAATAAAGAATCACTAATATATTCTGCCAAACATAGACCAATATAATATTAA
TTTCGAACATAGAGGTTTACGTTAGTTTTCTTAGTATTAGTGTTGAGTAATGACTGACATGATA
CTTTTGTCTTTGCATTGCAAGTGATGAACAGTCTGTGACAATTGACAAAGTTGATCCAAAAACT
ATTTGAATTGTAATATTATGTTCAGTACCATGGCTTCTCTAATGTTTGCTTTAGATCTTATATT
TCTTGATTTAACTATTTGTTTTCCTTATAAGGTGGATGGTTGCAGGTATTATTTTGTGAAGTAT
GTATGCTTTGAAATAAGCTTGCATTGCATAACCCCAATAATAATTTTTTTTCTTAATTTTTTTA
TGCAGGCAGCTAATATCGAGGCTGAAACCGCAGGAATTCCAGATGGTGAATATCAATTGACAAA
GCATGAATTTTCAAGTTTAGGACGTGGAAAATATAGTGGTATGGTACCTGGCACTTCATCTTCC
TATTTTAAACACATTACTCGTGCAAATTACTAGAATTTTGTCTTTCTTCTGATCACTGAAGTTA
ACTACTGCTTACACAGCAAAAATTTGAGGGGATCTGGTGTATTTTCATGGAGTTGAAATATTTT
AAATACAGAATGTTATACAACTTCTTTCTTGATTTTAGTGATGTTAATTGGTTGTCTCATATTT
ATTGAGCAATAGTTCATTAATATTCTGCTATGCTTTATTTATTTATCTTTTTTATTTTTAAAAG
GTTTCCTGCTCAACCAATTTGCATCAATAACTATATTTCACAAGGCTTTTTCCCATGTAGTCTT
ATCCCTGGTGTCCTATTGTGAATTTCAGAATATAGCACAACTGAATCATCTGATGATATTGAGA
AACAAGAGCTTGAGGAAGTGTCAGATGAAGATGGAACCTCCTTTTATGACACAAAAGAATATTT
TACTGAACCGACATCAATGACAGAAGCTGCAAAGTACTCAGAGAAGCATAGGAGATTTAATCAA
CTTGATAGTGAAGAGAAAATGCGTGCTGATAAGCAAGTTTGTAGTTCTGGATATCCACATATTG
AAAGGCGAAAAAAGCTTCCTGACCCGGTTGAGAAAGAGAAAGGGGTCAGTCTGTGGTCTATGAT
CAAAGACAATGTGGGGAAGGATCTCACACGAGTTTGTCTCCCTGTTTACTTTAATGAACCAATA
TCCTCTCTTCAGAAGTGCTTTGAGGACTTGGAGTACTCCTATCTTTTGGACAGAGCCTATGAGT
GTGGAAAAGCAGTAAGAGTTACATACTTTTTAGTCTATTAGATGCTCCTCATGTCTTGATTCAC
ATTGAACAACCTTTTCATTATTACACAATGCACATATCTAAGTGTCTTGAGTATTGCAAATTCT
TTATTGTGTTTCTTTACATGGCAGTCCAATGTTTTTTACACTTGCATGTGAGATTCATAAATTA
TCTATTGTCAACAATGAGATGGTAAACAACACGGATTCTCCATGGAAAGTGATAGATTTTATTC
TTCTTTATATCTGGACATTTCTCACAGATTATGGTCTTTGTAACAAACATCAATGTATTTATAA
GCATTTTAAATATCTATGAGTAATTAGGAAACCTGAGGACTTCAGCAACTGATCTCCTCTCTGT
TGATGATGTTTCCTTGCTGTGATTCTGACTTGTACGTTAAGGTGCCATGTGAAATAACAATAGC
CGATCTAACATCTATGGGAAAACCAGTGCCCCCCCAAGTAAATATAATTGACTCCATTAAACAA
TATCTCTTGAAGTCCATGCATGGAATTCGGCTAAACCTTCACATATTTTGACCAGTAGACGTTG
ATGGATTTCAGATAGCATTTAAATTCTATAATTGCTAGTATAAAAAATCTTAGGCATGCAGTAA
AATGCATGCGTTGTTAAGTCTCAGTTTCTTTCATTTCATGGACTTATTGGCATGTTTTCAGCAT
CAAATATTTCATGAAAAAGGAAAATCTTATTGGATTGCTGCTTGGTCCTCACTGTTCCGATGTG
TTTTATTTTTCAGGGGAACAGTGTCCTAAGGATCCTAAATGTTGCTGCTTTTGCCATCTCTGGA
TATGCTTCCTCTGAAGGCCGGCACTGTAAACCCTTTAATCCTTTGCTAGGAGAAACTTATGAAG
CTGACTTTCCTGATAAAGGAGTTCGTTTCTTCTCCGAAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.127212928
Functional Information
Coding potential Y
Potential coding position 297639-300605(+)
300563-297440(+)
297379-300540(-)
Potential amino acid sequence MLSEFSEVQGQVKVLCEERSNLLDTLRQLEAANIEAETAGIPDGEYQLTKHEFSSLGRGKYSEY
STTESSDDIEKQELEEVSDEDGTSFYDTKEYFTEPTSMTEAAKYSEKHRRFNQLDSEEKMRADK
QVCSSGYPHIERRKKLPDPVEKEKGVSLWSMIKDNVGKDLTRVCLPVYFNEPISSLQKCFEDLE
YSYLLDRAYECGKAGNSVLRILNVAAFAISGYASSEGRHCKPFNPLLGETYEADFPDKGVRFFS
EKISSFRESKSDDRRFYIFTATKTLHLRTDSKRDRVAWIQALVSTRSLFPSRSLNDSLSLVSHD
LSISTDRLKKRLLEEGINENLVKDCEQIMLSEFSEVQGQVKVLCEERSNLLDTLRQLEAANIEA
ETAGIPDGEYQLTKHEFSSLGRGKYSEYSTTESSDDIEKQELEEVSDEDGTSFYDTKEYFTEPT
SMTEAAKYSEKHRRFNQLDSEEKMRADKQVCSSGYPHIERRKKLPDPVEKEKGVSLWSMIKDNV
GKDLTRVCLPVYFNEPISSLQKCFEDLEYSYLLDRAYECGKAGNSVLRILNVAAFAISGYASSE
GRHCKPFNPLLGETYEADFPDKGVRFFSEKISSFRESKSDDRRFYIFTATKTLHLRTDSKRDRV
AWIQALVSTRSLFPSRSLNDSLSLVSHDLSISTDRLKKRLLEEGINENLVKDCEQIMLSEFSEV
QGQVKVLCEERSNLLDTLRQLEAANIEAETAGIPDGEYQLTKHEFSSLGRGKYSEYSTTESSDD
IEKQELEEVSDEDGTSFYDTKEYFTEPTSMTEAAKYSEKHRRFNQLDSEEKMRADKQVCSSGYP
HIERRKKLPDPVEKEKGVSLWSMIKDNVGKDLTRVCLPVYFNEPISSLQKCFEDLEYSYLLDRA
YECGKAGNSVLRILNVAAFAISGYASSEGRHCKPFNPLLGETYEADFPDKGVRFFSEKISSFRE
SKSDDRRFYIFTATKTLHLRTDSKRDRVAWIQALVSTRSLFPSRSLNDSLSLVSHDLSISTDRL
KKRLLEEGINENLVKDCEQIMLSEFSEVQGQVKVLCEERSNLLDTLRQLEAANIEAETAGIPDG
EYQLTKHEFSSLGRGKYSEYSTTESSDDIEKQELEEVSDEDGTSFYDTKEYFTEPTSMTEAAKY
SEKHRRFNQLDSEEKMRADKQVCSSGYPHIERRKKLPDPVEKEKGVSLWSMIKDNVGKDLTRVC
LPVYFNEPISSLQKCFEDLEYSYLLDRAYECGKAGNSVLRILNVAAFAISGYASSEGRHCKPFN
PLLGETYEADFPDKGVRFFSEK(+)
MKLTFLIKEFVSSPKRSHHFVRASPMIGGFIYLQLQRHFI*(+)
MMRSFRRRNELLYQESQLHKFLLAKD*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Liu et al., 2021