Detailed infomation of each circRNA
General Information | |
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CircRNA Name | POPTR_0001s00390_circ_g.1 |
ID in PlantcircBase | pop_circ_000005 |
Alias | Chr01:9860212-9863452 |
Organism | Populus trichocarpa |
Position | chr1: 297368-300608 JBrowse» |
Reference genome | Populus trichocarpa genome v3.0 |
Type | ue-circRNA |
Identification method | CIRCexplorer |
Parent gene | POPTR_0001s00390 |
Parent gene annotation | NA |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | stem xylem |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | POPTR_0001s00390.1:4 POPTR_0001s00390.3:4 POPTR_0001s00390.4:4 POPTR_0001s00390.2:4 POPTR_0001s00390.5:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.127212928 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
297639-300605(+) 300563-297440(+) 297379-300540(-) |
Potential amino acid sequence |
MLSEFSEVQGQVKVLCEERSNLLDTLRQLEAANIEAETAGIPDGEYQLTKHEFSSLGRGKYSEY STTESSDDIEKQELEEVSDEDGTSFYDTKEYFTEPTSMTEAAKYSEKHRRFNQLDSEEKMRADK QVCSSGYPHIERRKKLPDPVEKEKGVSLWSMIKDNVGKDLTRVCLPVYFNEPISSLQKCFEDLE YSYLLDRAYECGKAGNSVLRILNVAAFAISGYASSEGRHCKPFNPLLGETYEADFPDKGVRFFS EKISSFRESKSDDRRFYIFTATKTLHLRTDSKRDRVAWIQALVSTRSLFPSRSLNDSLSLVSHD LSISTDRLKKRLLEEGINENLVKDCEQIMLSEFSEVQGQVKVLCEERSNLLDTLRQLEAANIEA ETAGIPDGEYQLTKHEFSSLGRGKYSEYSTTESSDDIEKQELEEVSDEDGTSFYDTKEYFTEPT SMTEAAKYSEKHRRFNQLDSEEKMRADKQVCSSGYPHIERRKKLPDPVEKEKGVSLWSMIKDNV GKDLTRVCLPVYFNEPISSLQKCFEDLEYSYLLDRAYECGKAGNSVLRILNVAAFAISGYASSE GRHCKPFNPLLGETYEADFPDKGVRFFSEKISSFRESKSDDRRFYIFTATKTLHLRTDSKRDRV AWIQALVSTRSLFPSRSLNDSLSLVSHDLSISTDRLKKRLLEEGINENLVKDCEQIMLSEFSEV QGQVKVLCEERSNLLDTLRQLEAANIEAETAGIPDGEYQLTKHEFSSLGRGKYSEYSTTESSDD IEKQELEEVSDEDGTSFYDTKEYFTEPTSMTEAAKYSEKHRRFNQLDSEEKMRADKQVCSSGYP HIERRKKLPDPVEKEKGVSLWSMIKDNVGKDLTRVCLPVYFNEPISSLQKCFEDLEYSYLLDRA YECGKAGNSVLRILNVAAFAISGYASSEGRHCKPFNPLLGETYEADFPDKGVRFFSEKISSFRE SKSDDRRFYIFTATKTLHLRTDSKRDRVAWIQALVSTRSLFPSRSLNDSLSLVSHDLSISTDRL KKRLLEEGINENLVKDCEQIMLSEFSEVQGQVKVLCEERSNLLDTLRQLEAANIEAETAGIPDG EYQLTKHEFSSLGRGKYSEYSTTESSDDIEKQELEEVSDEDGTSFYDTKEYFTEPTSMTEAAKY SEKHRRFNQLDSEEKMRADKQVCSSGYPHIERRKKLPDPVEKEKGVSLWSMIKDNVGKDLTRVC LPVYFNEPISSLQKCFEDLEYSYLLDRAYECGKAGNSVLRILNVAAFAISGYASSEGRHCKPFN PLLGETYEADFPDKGVRFFSEK(+) MKLTFLIKEFVSSPKRSHHFVRASPMIGGFIYLQLQRHFI*(+) MMRSFRRRNELLYQESQLHKFLLAKD*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Liu et al., 2021 |