Detail information of BGIOSGA023642_circ_g.3


General Information
CircRNA Name BGIOSGA023642_circ_g.3
ID in PlantcircBase osi_circ_006975
Alias 6:32711492|32712304
Organism Oryza sativa ssp. indica
Position chr6: 32711492-32712304  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA023642
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA023642_circ_g.4
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA023642-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCCCCTGTTCATGGAGAAAAGAGAGACGATTCACATTATTGGGGCCCATCGTTTGATAATGGT
GATGATAATGACTCCCTATGGAACTTCAATCGCAAGgcttctccacaataaaggaactcacagt
tgaaatggagccacctgttgtacaaaaggatcagcctaccgttgaagacagtaaagtgtctacc
aatgggcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTTCTCCACAATAAAGGAACTCACAGTTGAAATGGAGCCACCTGTTGTACAAAAGGATCAGCC
TACCGTTGAAGACAGTAAAGTGTCTACCAATGGGCCATCAGCACCTACATCAACAGAGAAAGAA
GATAGCAGGGGTGATAAATCTGCCGCTGCCTCTGAGCAAACTGTAGAACCTGATGCAACTCCTT
CCGATAGCAAAACGGTTGCAGCAAAAAGTCCTCCAGTTAGTCCTGTTAAGAACACAAAGGATGG
CCATAGTGATGAACGTGATAAAAAACAATCTGGGACAAACGACACCTCGTCACGTGCAGTTGAG
AGTGTCAGGTATTCATCTTATATGAACTATACAGCAGATCGTCCTACTATGAAAACAGAAACTT
GTTTCCTTCCCCCATATCATCAATTTCATACACAAAAGGTGTAATCTCTAATTGCTCTGAACCT
GTCAACTTTGTTGATCAGTAAACATCCCAGGATTTGATACTGCCATTGAACTATTAAGACCGCT
GGTCGCTCCTACATAATTCAACCTTACTAGTGCTTTGGTTTCCCAATATATAATTGTTAAATTT
ATCTGGAGTAGGGCCATTCAAATCCTGAACTTGATACGTGAAACAAGTCCCAGTCTGGGTAGTT
CATTGTTGTTTACTTGTGTGAAACCTATGTTCTTATTTCATGGTAAATTTTTCAGTAACAATGG
AGGAGCAGATTCCCCTGTTCATGGAGAAAAGAGAGACGATTCACATTATTGGGGCCCATCGTTT
GATAATGGTGATGATAATGACTCCCTATGGAACTTCAATCGCAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 32711673-32711519(+)
32712287-32711503(+)
32711525-32711503(+)
Potential amino acid sequence MQLLPIAKRLQQKVLQLVLLRTQRMAIVMNVIKNNLGQTTPRHVQLRVSVTMEEQIPLFMEKRE
TIHIIGAHRLIMVMIMTPYGTSIARLLHNKGTHS*(+)
MELQSQGFSTIKELTVEMEPPVVQKDQPTVEDSKVSTNGPSAPTSTEKEDSRGDKSAAASEQTV
EPDATPSDSKTVAAKSPPVSPVKNTKDGHSDERDKKQSGTNDTSSRAVESVSNNGGADSPVHGE
KRDDSHYWGPSFDNGDDNDSLWNFNRKASPQ*(+)
MEPPVVQKDQPTVEDSKVSTNGPSAPTSTEKEDSRGDKSAAASEQTVEPDATPSDSKTVAAKSP
PVSPVKNTKDGHSDERDKKQSGTNDTSSRAVESVSNNGGADSPVHGEKRDDSHYWGPSFDNGDD
NDSLWNFNRKASPQ*(+)
Sponge-miRNAs osa-miR5080
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021