Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os06g0184300_circ_g.1 |
| ID in PlantcircBase | osa_circ_029936 |
| Alias | NA |
| Organism | Oryza sativa |
| Position | chr6: 4213857-4215670 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer |
| Parent gene | Os06g0184300 |
| Parent gene annotation |
Similar to Ubiquitin carboxyl-terminal hydrolase. (Os06t0184300- 01);Similar to Ubiquitin carboxyl-terminal hydrolase. (Os06t0184 300-02);Similar to Ubiquitin carboxyl-terminal hydrolase (Fragme nt). (Os06t0184300-03) |
| Parent gene strand | - |
| Alternative splicing | Os06g0184300_circ_g.2 Os06g0184300_circ_g.3 |
| Support reads | 1 |
| Tissues | shoot |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Os06t0184300-03:4 Os06t0184300-02:5 Os06t0184300-01:4 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | osi_circ_006560* |
| PMCS | 0.104873879 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
4215627-4215642(-) 4213861-4215642(-) |
| Potential amino acid sequence |
MLFYVRDRVGNPTPRKDNITANMPARRTIPEKISGLSDMIQSGVIEAKLNGSSSPYGDKRLHGI SNGNSIKTSREHYLKKDGKTEAPKASENNGLASTQKASAPQIDGATLSAQSKQITSTGHREVSS SDRSASLTHVIVNQAVAMVPSQELQPKVDGLTDTSSLGNGNAILSERNKQTSQHQNPFSMPASH GKDTGAGLAAQTFPTKDAIVSNGVVPSSRDPISSEKVCGLQKSIKQDDKTVKELPISENNIVSG LERVNARKQTSSEVSMKVAAADSCNSNTPKRVDLKSKKLVRYPVMNMWLGPRQVMLGSLKVQKK KKCNRTRRRSVVCEDMANATCSGNNTSEQQASTSTTTSSETVQCTPRGRKRAYDSDSPKNNNQK QNKQDVIGADTGSGELNMDKRNVISETAASAELPKLGPGSSANQEHSRNNVHAKLGVPRHFTVL TRDLAEVTVPCWDDVAVSNAEARESKHSESKSIGYVLDEWYAKSVRQMY*(-) MVRQVREADVLRQKAYMLFYVRDRVGNPTPRKDNITANMPARRTIPEKISGLSDMIQSGVIEAK LNGSSSPYGDKRLHGISNGNSIKTSREHYLKKDGKTEAPKASENNGLASTQKASAPQIDGATLS AQSKQITSTGHREVSSSDRSASLTHVIVNQAVAMVPSQELQPKVDGLTDTSSLGNGNAILSERN KQTSQHQNPFSMPASHGKDTGAGLAAQTFPTKDAIVSNGVVPSSRDPISSEKVCGLQKSIKQDD KTVKELPISENNIVSGLERVNARKQTSSEVSMKVAAADSCNSNTPKRVDLKSKKLVRYPVMNMW LGPRQVMLGSLKVQKKKKCNRTRRRSVVCEDMANATCSGNNTSEQQASTSTTTSSETVQCTPRG RKRAYDSDSPKNNNQKQNKQDVIGADTGSGELNMDKRNVISETAASAELPKLGPGSSANQEHSR NNVHAKLGVPRHFTVLTRDLAEVTVPCWDDVAVSNAEARESKHSESKSIGYVLDEWYAKSVRQM Y*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |