Detail information of Os06g0184300_circ_g.1


General Information
CircRNA Name Os06g0184300_circ_g.1
ID in PlantcircBase osa_circ_029936
Alias NA
Organism Oryza sativa
Position chr6: 4213857-4215670  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os06g0184300
Parent gene annotation Similar to Ubiquitin carboxyl-terminal hydrolase. (Os06t0184300-
01);Similar to Ubiquitin carboxyl-terminal hydrolase. (Os06t0184
300-02);Similar to Ubiquitin carboxyl-terminal hydrolase (Fragme
nt). (Os06t0184300-03)
Parent gene strand -
Alternative splicing Os06g0184300_circ_g.2 Os06g0184300_circ_g.3
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os06t0184300-03:4
Os06t0184300-02:5
Os06t0184300-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATTATCCTTGCGTGGAGTCGGATTCCCAACTCTGTCACGTACATAAAATAACATATATGCTTT
CTGTCTCAATACATCTGCCTCACGGACTTGGCGTACcattcatctaacacatatccaatgctct
tgctttctgaatgttttgactctcttgcctcagcatttgacacagcaacatcatcccagcatgg
aactgaaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1433
Transcript exons: 4213857-4213950,4214055-4214673,4214792-4214917,4215002-
4215175,4215251-4215670
CATTCATCTAACACATATCCAATGCTCTTGCTTTCTGAATGTTTTGACTCTCTTGCCTCAGCAT
TTGACACAGCAACATCATCCCAGCATGGAACAGTAACTTCAGCCAAGTCCCTTGTCAGAACAGT
AAAATGCCGGGGAACTCCCAATTTTGCATGAACATTGTTCCTTGAATGTTCCTGATTTGCAGAA
GAGCCTGGACCCAGCTTCGGAAGCTCAGCACTAGCAGCGGTTTCACTAATAACATTTCTCTTAT
CCATGTTAAGTTCACCACTACCAGTATCGGCTCCAATAACGTCTTGCTTGTTTTGCTTCTGGTT
ATTATTTTTAGGACTGTCACTATCATAGGCACGTTTCCGCCCTCTGGGAGTACATTGCACAGTT
TCAGACGACGTTGTTGTTGATGTTGATGCCTGCTGCTCGCTTGTGTTGTTACCTGAACAAGTGG
CATTGGCCATGTCCTCACAAACTACAGACCGTCTTCTAGTTCTATTGCATTTCTTTTTCTTTTG
TACCTTTAGTGAACCTAGCATAACTTGTCTGGGCCCAAGCCACATGTTCATGACTGGATATCTC
ACAAGTTTCTTTGACTTCAAATCCACCCTTTTAGGTGTGTTGCTATTGCACGAATCAGCTGCAG
CTACCTTCATGGAAACTTCAGAGCTAGTCTGTTTTCTGGCGTTGACTCGTTCAAGTCCTGATAC
TATATTGTTCTCACTTATAGGAAGTTCTTTCACCGTTTTGTCATCTTGCTTGATGGATTTTTGC
AAGCCACACACCTTCTCACTGGAAATTGGATCCCTGCTACTAGGTACAACACCATTTGAAACAA
TAGCATCCTTAGTTGGGAAAGTTTGTGCAGCAAGCCCTGCCCCTGTGTCCTTTCCATGGGAAGC
TGGCATAGAAAATGGATTTTGATGCTGGGATGTTTGTTTATTTCGCTCAGACAATATCGCATTG
CCATTGCCCAGGGAAGAGGTATCGGTTAAGCCATCAACCTTTGGTTGCAATTCCTCTCTGTGAC
CAGTTGAAGTAATTTGCTTAGATTGAGCAGATAAGGTAGCACCATCAATTTGAGGTGCAGAAGC
TTTCTGTGTGGAAGCCAGGCCATTGTTTTCAGAGGCTTTAGGAGCTTCAGTTTTGCCATCTTTC
TTCAAATAATGCTCTCTTGAAGTCTTGATTGAGTTCCCATTGCTTATGCCGTGCAACCTCTTAT
CGCCATAAGGAGACGAGGAACCGTTCAATTTTGCTTCAATTACGCCGCTCTGGATCATATCACT
CAGACCTGAGATCTTTTCAGGTATTGTTCTCCTGGCTGGCATATTAGCAGTGATATTATCCTTG
CGTGGAGTCGGATTCCCAACTCTGTCACGTACATAAAATAACATATATGCTTTCTGTCTCAATA
CATCTGCCTCACGGACTTGGCGTAC

Genomic sequence CATTCATCTAACACATATCCAATGCTCTTGCTTTCTGAATGTTTTGACTCTCTTGCCTCAGCAT
TTGACACAGCAACATCATCCCAGCATGGAACTGAAAAGGCCAAAAGGTAAGAATATGGCAGGTA
CAAAATAGATGGCAAACTAGCATATTTGTAGCGCATGACAAAGTGTAGAGGGCAAAGAGATGGA
ACTAACCAGTAACTTCAGCCAAGTCCCTTGTCAGAACAGTAAAATGCCGGGGAACTCCCAATTT
TGCATGAACATTGTTCCTTGAATGTTCCTGATTTGCAGAAGAGCCTGGACCCAGCTTCGGAAGC
TCAGCACTAGCAGCGGTTTCACTAATAACATTTCTCTTATCCATGTTAAGTTCACCACTACCAG
TATCGGCTCCAATAACGTCTTGCTTGTTTTGCTTCTGGTTATTATTTTTAGGACTGTCACTATC
ATAGGCACGTTTCCGCCCTCTGGGAGTACATTGCACAGTTTCAGACGACGTTGTTGTTGATGTT
GATGCCTGCTGCTCGCTTGTGTTGTTACCTGAACAAGTGGCATTGGCCATGTCCTCACAAACTA
CAGACCGTCTTCTAGTTCTATTGCATTTCTTTTTCTTTTGTACCTTTAGTGAACCTAGCATAAC
TTGTCTGGGCCCAAGCCACATGTTCATGACTGGATATCTCACAAGTTTCTTTGACTTCAAATCC
ACCCTTTTAGGTGTGTTGCTATTGCACGAATCAGCTGCAGCTACCTTCATGGAAACTTCAGAGC
TAGTCTGTTTTCTGGCGTTGACTCGTTCAAGTCCTGATACTATATTGTTCTGCACAAAAGCCAG
AAACAAAATATACAAATCAGCCTATATGAACCTTATGGGGTCAATCAAAAGTCTACAGGATCAT
ATGGGATAGTGACACATAATAAGGGTAATGGTACCATACCTCACTTATAGGAAGTTCTTTCACC
GTTTTGTCATCTTGCTTGATGGATTTTTGCAAGCCACACACCTTCTCACTGGAAATTGGATCCC
TGCTACTAGGTACAACACCATTTGAAACAATAGCATCCTGCAGAGTTGAATGAACAAAACAAGT
CACATAGCAAAAATATTACCAAAAAATCAGCAGTGATCACCATAAGAGTAAACATACCTTAGTT
GGGAAAGTTTGTGCAGCAAGCCCTGCCCCTGTGTCCTTTCCATGGGAAGCTGGCATAGAAAATG
GATTTTGATGCTGGGATGTTTGTTTATTTCGCTCAGACAATATCGCATTGCCATTGCCCAGGGA
AGAGGTATCGGTTAAGCCATCAACCTTTGGTTGCAATTCCTGCGACGGAACCATGGCCACTGCT
TGGTTCACAATCACATGTGTAAGAGATGCAGATCGATCTGATGAAGATACCTCTCTGTGACCAG
TTGAAGTAATTTGCTTAGATTGAGCAGATAAGGTAGCACCATCAATTTGAGGTGCAGAAGCTTT
CTGTGTGGAAGCCAGGCCATTGTTTTCAGAGGCTTTAGGAGCTTCAGTTTTGCCATCTTTCTTC
AAATAATGCTCTCTTGAAGTCTTGATTGAGTTCCCATTGCTTATGCCGTGCAACCTCTTATCGC
CATAAGGAGACGAGGAACCGTTCAATTTTGCTTCAATTACGCCGCTCTGGATCATATCACTCAG
ACCTGAGATCTTTTCAGGTATTGTTCTCCTGGCTGGCATATTAGCAGTGATATTATCCTTGCGT
GGAGTCGGATTCCCAACTCTGTCACGTACATAAAATAACATATATGCTTTCTGTCTCAATACAT
CTGCCTCACGGACTTGGCGTAC
Conservation Information
Conserved circRNAs osi_circ_006560*
PMCS 0.104873879
Functional Information
Coding potential Y
Potential coding position 4215627-4215642(-)
4213861-4215642(-)
Potential amino acid sequence MLFYVRDRVGNPTPRKDNITANMPARRTIPEKISGLSDMIQSGVIEAKLNGSSSPYGDKRLHGI
SNGNSIKTSREHYLKKDGKTEAPKASENNGLASTQKASAPQIDGATLSAQSKQITSTGHREVSS
SDRSASLTHVIVNQAVAMVPSQELQPKVDGLTDTSSLGNGNAILSERNKQTSQHQNPFSMPASH
GKDTGAGLAAQTFPTKDAIVSNGVVPSSRDPISSEKVCGLQKSIKQDDKTVKELPISENNIVSG
LERVNARKQTSSEVSMKVAAADSCNSNTPKRVDLKSKKLVRYPVMNMWLGPRQVMLGSLKVQKK
KKCNRTRRRSVVCEDMANATCSGNNTSEQQASTSTTTSSETVQCTPRGRKRAYDSDSPKNNNQK
QNKQDVIGADTGSGELNMDKRNVISETAASAELPKLGPGSSANQEHSRNNVHAKLGVPRHFTVL
TRDLAEVTVPCWDDVAVSNAEARESKHSESKSIGYVLDEWYAKSVRQMY*(-)
MVRQVREADVLRQKAYMLFYVRDRVGNPTPRKDNITANMPARRTIPEKISGLSDMIQSGVIEAK
LNGSSSPYGDKRLHGISNGNSIKTSREHYLKKDGKTEAPKASENNGLASTQKASAPQIDGATLS
AQSKQITSTGHREVSSSDRSASLTHVIVNQAVAMVPSQELQPKVDGLTDTSSLGNGNAILSERN
KQTSQHQNPFSMPASHGKDTGAGLAAQTFPTKDAIVSNGVVPSSRDPISSEKVCGLQKSIKQDD
KTVKELPISENNIVSGLERVNARKQTSSEVSMKVAAADSCNSNTPKRVDLKSKKLVRYPVMNMW
LGPRQVMLGSLKVQKKKKCNRTRRRSVVCEDMANATCSGNNTSEQQASTSTTTSSETVQCTPRG
RKRAYDSDSPKNNNQKQNKQDVIGADTGSGELNMDKRNVISETAASAELPKLGPGSSANQEHSR
NNVHAKLGVPRHFTVLTRDLAEVTVPCWDDVAVSNAEARESKHSESKSIGYVLDEWYAKSVRQM
Y*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017