Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os06g0184300_circ_g.1 |
ID in PlantcircBase | osa_circ_029936 |
Alias | NA |
Organism | Oryza sativa |
Position | chr6: 4213857-4215670 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os06g0184300 |
Parent gene annotation |
Similar to Ubiquitin carboxyl-terminal hydrolase. (Os06t0184300- 01);Similar to Ubiquitin carboxyl-terminal hydrolase. (Os06t0184 300-02);Similar to Ubiquitin carboxyl-terminal hydrolase (Fragme nt). (Os06t0184300-03) |
Parent gene strand | - |
Alternative splicing | Os06g0184300_circ_g.2 Os06g0184300_circ_g.3 |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os06t0184300-03:4 Os06t0184300-02:5 Os06t0184300-01:4 |
Conservation Information | |
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Conserved circRNAs | osi_circ_006560* |
PMCS | 0.104873879 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
4215627-4215642(-) 4213861-4215642(-) |
Potential amino acid sequence |
MLFYVRDRVGNPTPRKDNITANMPARRTIPEKISGLSDMIQSGVIEAKLNGSSSPYGDKRLHGI SNGNSIKTSREHYLKKDGKTEAPKASENNGLASTQKASAPQIDGATLSAQSKQITSTGHREVSS SDRSASLTHVIVNQAVAMVPSQELQPKVDGLTDTSSLGNGNAILSERNKQTSQHQNPFSMPASH GKDTGAGLAAQTFPTKDAIVSNGVVPSSRDPISSEKVCGLQKSIKQDDKTVKELPISENNIVSG LERVNARKQTSSEVSMKVAAADSCNSNTPKRVDLKSKKLVRYPVMNMWLGPRQVMLGSLKVQKK KKCNRTRRRSVVCEDMANATCSGNNTSEQQASTSTTTSSETVQCTPRGRKRAYDSDSPKNNNQK QNKQDVIGADTGSGELNMDKRNVISETAASAELPKLGPGSSANQEHSRNNVHAKLGVPRHFTVL TRDLAEVTVPCWDDVAVSNAEARESKHSESKSIGYVLDEWYAKSVRQMY*(-) MVRQVREADVLRQKAYMLFYVRDRVGNPTPRKDNITANMPARRTIPEKISGLSDMIQSGVIEAK LNGSSSPYGDKRLHGISNGNSIKTSREHYLKKDGKTEAPKASENNGLASTQKASAPQIDGATLS AQSKQITSTGHREVSSSDRSASLTHVIVNQAVAMVPSQELQPKVDGLTDTSSLGNGNAILSERN KQTSQHQNPFSMPASHGKDTGAGLAAQTFPTKDAIVSNGVVPSSRDPISSEKVCGLQKSIKQDD KTVKELPISENNIVSGLERVNARKQTSSEVSMKVAAADSCNSNTPKRVDLKSKKLVRYPVMNMW LGPRQVMLGSLKVQKKKKCNRTRRRSVVCEDMANATCSGNNTSEQQASTSTTTSSETVQCTPRG RKRAYDSDSPKNNNQKQNKQDVIGADTGSGELNMDKRNVISETAASAELPKLGPGSSANQEHSR NNVHAKLGVPRHFTVLTRDLAEVTVPCWDDVAVSNAEARESKHSESKSIGYVLDEWYAKSVRQM Y*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |