Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G17680_circ_g.1 |
ID in PlantcircBase | ath_circ_003122 |
Alias | At_ciR5720 |
Organism | Arabidpsis thaliana |
Position | chr1: 6076388-6077247 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | AT1G17680 |
Parent gene annotation |
Putative uncharacterized protein At1g17680 |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | 2 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G17680.2:3 AT1G17680.3:3 AT1G17680.1:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.144665203 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
6076388-6077244(+) |
Potential amino acid sequence |
MEDKGKGVVEGDEGNLISELEEGPSNMECDKQVLGGDTNYDDKDLNSDEEGLVDDDDDDSDDDD EGDESEEEDDFEAGSVPNTFERPEYEALAERKRKALADSQRNPSNISNSTSGVEGFMEFMSSGR RRKSRKYKKKGRRPGSKKEVAPDILKRFREALFLHAHGRDIEMEDKGKGVVEGDEGNLISELEE GPSNMECDKQVLGGDTNYDDKDLNSDEEGLVDDDDDDSDDDDEGDESEEEDDFEAGSVPNTFER PEYEALAERKRKALADSQRNPSNISNSTSGVEGFMEFMSSGRRRKSRKYKKKGRRPGSKKEVAP DILKRFREALFLHAHGRDIEMEDKGKGVVEGDEGNLISELEEGPSNMECDKQVLGGDTNYDDKD LNSDEEGLVDDDDDDSDDDDEGDESEEEDDFEAGSVPNTFERPEYEALAERKRKALADSQRNPS NISNSTSGVEGFMEFMSSGRRRKSRKYKKKGRRPGSKKEVAPDILKRFREALFLHAHGRDIEME DKGKGVVEGDEGNLISELEEGPSNMECDKQVLGGDTNYDDKDLNSDEEGLVDDDDDDSDDDDEG DESEEEDDFEAGSVPNTFERPEYEALAERKRKALADSQRNPSNISNSTSGVEGFMEFMSSGRRR KSRKYKKKGRRPGSKKEVAPDILKRFREALFLHAHGRDIE(+) |
Sponge-miRNAs | ath-miR414 ath-miR5658 |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015 |