Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | BGIOSGA007320_circ_g.2 |
ID in PlantcircBase | osi_circ_003563 |
Alias | 2:14610|14947 |
Organism | Oryza sativa ssp. indica |
Position | chr2: 14610-14947 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA007320 |
Parent gene annotation | NA |
Parent gene strand | + |
Alternative splicing | BGIOSGA007320_circ_g.1 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | BGIOSGA007320-TA:2 |
Conservation Information | |
---|---|
Conserved circRNAs | osa_circ_012579* |
PMCS |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
14931-14612(-) 14650-14944(+) 14875-14852(+) |
Potential amino acid sequence |
MESVTLSSLFFPLFSQPFIFPAMFHYLVCIRLHLLEHSIDLIIIIHVRCCVKIMGSFLPFSKHS ISHSTSFVAFCRVWVNLCFCTSMESVTLSSLFFPLFSQPFIFPAMFHYLVCIRLHLLEHSIDLI IIIHVRCCVKIMGSFLPFSKHSISHSTSFVAFCRVWVNLCFCTSMESVTLSSLFFPLFSQPFIF PAMFHYLVCIRLHLLEHSIDLIIIIHVRCCVKIMGSFLPFSKHSISHSTSFVAFCRVWVNLCFC TSMESVTLSSLFFPLFSQPFIFPAMFHYLVCIRLHLLEHSIDLIIIIHVRCCVKIMGSFLPFSK HSISHSTSFVAFCRVWVN(-) MAYAMLGKWEEAAHDLHTASNMDYDDEINAVLKKVEPNAHKIMEHRRKYERLRKEREEKRAERD RFHRRAEAQINPDSAKGYKTRGMAYAMLGKWEEAAHDLHTASNMDYDDEINAVLKKVEPNAHKI MEHRRKYERLRKEREEKRAERDRFHRRAEAQINPDSAKGYKTRGMAYAMLGKWEEAAHDLHTAS NMDYDDEINAVLKKVEPNAHKIMEHRRKYERLRKEREEKRAERDRFHRRAEAQINPDSAKGYKT RGMAYAMLGKWEEAAHDLHTASNMDYDDEINAVLKKVEPNAHKIMEHRRKYERLRKEREEKRAE RDRFHRRAEAQ(+) MNGCEKRGKKRELSVTDSIDVQKHRLTQTLQKATKLVEWLMLCLENGRKLPMIFTQHRTWIMMM RSMLCSRRWSLMHTR*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Huang et al., 2021 |