Plant Circular RNA Database

Detail information of Os01g0850200_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os01g0850200_circ_g.1
					
						ID in PlantcircBase
						osa_circ_040703
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr1: 36597786-36599525  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRI-long
					
						Parent gene
						
							Os01g0850200						
					
						Parent gene annotation
						
							Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01
t0850200-00)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						NA
					
						Tissues
						leaf
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os01t0850200-00:2

General Information
CircRNA Name	Os01g0850200_circ_g.1
ID in PlantcircBase	osa_circ_040703
Alias	NA
Organism	Oryza sativa
Position	chr1: 36597786-36599525 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRI-long
Parent gene	Os01g0850200
Parent gene annotation	Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01 t0850200-00)
Parent gene strand	-
Alternative splicing	NA
Support reads	NA
Tissues	leaf
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os01t0850200-00:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ATAGTATTAGCAGATTAAATCATCAGAAGTGAAGTGTGGAATTAGCAGCAGCTGAGAGATATTA
CCTGTTTCCCCTGATCTTGAACCAGGTCTCGGCGCAattgaagtgaaagagccaagatataaca
aaagcaaacaccatgcaagcaagaaggaagttgagaaaccggtggccttgccaaaacctccgag
gttcactg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 246
Transcript exons: 36597786-36597996,36599491-36599525
ATTGAAGTGAAAGAGCCAAGATATAACAAAAGCAAACACCATGCAAGCAAGAAGGAAGTTGAGA
AACCGGTGGCCTTGCCAAAACCTCCGAGGTTCACTGGCAGGCATTTGCGAAGCCGCGGTGTTAC
TTGATTCATTCCACTGCTCGATGAACTCGGCATCACCGATACCTACCACATTGCATGCAGTTGA
GCCACAGATTTCGCAGATCCTGTTTCCCCTGATCTTGAACCAGGTCTCGGCGCA
						
					

						Genomic sequence
						
							ATTGAAGTGAAAGAGCCAAGATATAACAAAAGCAAACACCATGCAAGCAAGAAGGAAGTTGAGA
AACCGGTGGCCTTGCCAAAACCTCCGAGGTTCACTGGCAGGCATTTGCGAAGCCGCGGTGTTAC
TTGATTCATTCCACTGCTCGATGAACTCGGCATCACCGATACCTACCACATTGCATGCAGTTGA
GCCACAGATTTCGCAGATCCTAAGACAAGTAAAGGAACATGGAGCATTTTAATTTTCTAGATTC
CAATTGCAAAAGCAGAAAATGGAGTTATGCTTATGTAGTTATATTACAGATCATAAGGAGAATA
ATGCTAACACATTCTTTTATGCCTCTACAATACAAAGAGAGTAACAACATTATGAATGCTTTAA
CAATTAATATTTCACTTGAACCACTATCAAAGCACAACATGAAGTGGAAGGGCACAAGTGCAGT
TACATCTCAACACTGATCAATAGCACAGATGCTTGTAATTTGGTCAGAAATATCAAGCATGTAT
TTATCTTATCCTGACTCTAATCCTCACCTCAATTGAGGTGATAAAACCCAAGTAACTATGTTGG
TACGATATACTAGCACAAAAACAGGTTCCCACTTTCAATATTATATTCCCTTCCATTTAAGCAA
CAGTAATACACAAAAGGCTGTGAAATACACCTTAATTCAGAGCTCTGGTCCTAGCATTTACCAA
CAGTCATCCCATAGTAACTAGAGGCTAGGGATGTAAAACATTTTCACTATCTAAAAAAAGTAAC
TATAACTATAAAATGCATAATAAAGGAAATACTGGTGTTAGTAAAACAGTGAACATATGTATAG
GGAGAAAATAGCCCATCCATCTGGATGCTTGCCTCAAGGGACTATCTGTTATATTTCTCTTGTG
AATGTTGTACTGAAAAACACCAATCATTTAATTGCTTAAAGATGATAGCTTGATGCAAATTTAT
TTTCCATTCATATTGGTTCTACATGGTACATGCTCATCAAATGATTTGAAGAGCAAGGATAGGA
TAAGAAACAATCTTCAGCTTACTATATCTTACTCATATATTCTTGTATGAGGACCCTCCATCTT
CTTCTTTTTTTCTCACTTCATTTTTTTAATAGTTAAGATTAATTAGTATGTATACCAGTGAGAA
TTCTAATAGTCTAGTTCCTTGGAATTCGATGTCAGATAAACATAGCTCGTGATCTCTTAATGAA
ATGACCGTCAGGTAACTTAACTACTATTGGCCATAATGTTCGTGTAGAAGTATCTAAGTACATT
CTTTTAGGAATGTGACACCATAGCACTCCCTATAGAGTCTAGATCACCACAACGAAGGCATGCC
AAGAAAAGGGTCAGCGCTTCCACTTTCGGAGATCATGAGAGTTACACAAGAATCTGCAAGAAAA
AGCAGACCGAAAGGAATCTAACTTTATCCTCCATCTGAAATGTTCTACACCATGTTGGGGTTCC
TAAGCTTTTCCTAGATCCTACTGGTTAATCATACTCCACTTTGCCCTTACCTCTCACATCACAC
TCTATCCTTCATATCCCTACCTAAATAAAGCAAAAACAAGGAACATTTCGTACTAAAAGATCCA
TCCAGTTACAGTAGCCAAATATTTTCATTCGAGTTTGTGCATAGTATTAGCAGATTAAATCATC
AGAAGTGAAGTGTGGAATTAGCAGCAGCTGAGAGATATTACCTGTTTCCCCTGATCTTGAACCA
GGTCTCGGCGCA
						
					

			
		

Sequences
Splice junction sequence	ATAGTATTAGCAGATTAAATCATCAGAAGTGAAGTGTGGAATTAGCAGCAGCTGAGAGATATTA CCTGTTTCCCCTGATCTTGAACCAGGTCTCGGCGCAattgaagtgaaagagccaagatataaca aaagcaaacaccatgcaagcaagaaggaagttgagaaaccggtggccttgccaaaacctccgag gttcactg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 246 Transcript exons: 36597786-36597996,36599491-36599525 ATTGAAGTGAAAGAGCCAAGATATAACAAAAGCAAACACCATGCAAGCAAGAAGGAAGTTGAGA AACCGGTGGCCTTGCCAAAACCTCCGAGGTTCACTGGCAGGCATTTGCGAAGCCGCGGTGTTAC TTGATTCATTCCACTGCTCGATGAACTCGGCATCACCGATACCTACCACATTGCATGCAGTTGA GCCACAGATTTCGCAGATCCTGTTTCCCCTGATCTTGAACCAGGTCTCGGCGCA
Genomic sequence	ATTGAAGTGAAAGAGCCAAGATATAACAAAAGCAAACACCATGCAAGCAAGAAGGAAGTTGAGA AACCGGTGGCCTTGCCAAAACCTCCGAGGTTCACTGGCAGGCATTTGCGAAGCCGCGGTGTTAC TTGATTCATTCCACTGCTCGATGAACTCGGCATCACCGATACCTACCACATTGCATGCAGTTGA GCCACAGATTTCGCAGATCCTAAGACAAGTAAAGGAACATGGAGCATTTTAATTTTCTAGATTC CAATTGCAAAAGCAGAAAATGGAGTTATGCTTATGTAGTTATATTACAGATCATAAGGAGAATA ATGCTAACACATTCTTTTATGCCTCTACAATACAAAGAGAGTAACAACATTATGAATGCTTTAA CAATTAATATTTCACTTGAACCACTATCAAAGCACAACATGAAGTGGAAGGGCACAAGTGCAGT TACATCTCAACACTGATCAATAGCACAGATGCTTGTAATTTGGTCAGAAATATCAAGCATGTAT TTATCTTATCCTGACTCTAATCCTCACCTCAATTGAGGTGATAAAACCCAAGTAACTATGTTGG TACGATATACTAGCACAAAAACAGGTTCCCACTTTCAATATTATATTCCCTTCCATTTAAGCAA CAGTAATACACAAAAGGCTGTGAAATACACCTTAATTCAGAGCTCTGGTCCTAGCATTTACCAA CAGTCATCCCATAGTAACTAGAGGCTAGGGATGTAAAACATTTTCACTATCTAAAAAAAGTAAC TATAACTATAAAATGCATAATAAAGGAAATACTGGTGTTAGTAAAACAGTGAACATATGTATAG GGAGAAAATAGCCCATCCATCTGGATGCTTGCCTCAAGGGACTATCTGTTATATTTCTCTTGTG AATGTTGTACTGAAAAACACCAATCATTTAATTGCTTAAAGATGATAGCTTGATGCAAATTTAT TTTCCATTCATATTGGTTCTACATGGTACATGCTCATCAAATGATTTGAAGAGCAAGGATAGGA TAAGAAACAATCTTCAGCTTACTATATCTTACTCATATATTCTTGTATGAGGACCCTCCATCTT CTTCTTTTTTTCTCACTTCATTTTTTTAATAGTTAAGATTAATTAGTATGTATACCAGTGAGAA TTCTAATAGTCTAGTTCCTTGGAATTCGATGTCAGATAAACATAGCTCGTGATCTCTTAATGAA ATGACCGTCAGGTAACTTAACTACTATTGGCCATAATGTTCGTGTAGAAGTATCTAAGTACATT CTTTTAGGAATGTGACACCATAGCACTCCCTATAGAGTCTAGATCACCACAACGAAGGCATGCC AAGAAAAGGGTCAGCGCTTCCACTTTCGGAGATCATGAGAGTTACACAAGAATCTGCAAGAAAA AGCAGACCGAAAGGAATCTAACTTTATCCTCCATCTGAAATGTTCTACACCATGTTGGGGTTCC TAAGCTTTTCCTAGATCCTACTGGTTAATCATACTCCACTTTGCCCTTACCTCTCACATCACAC TCTATCCTTCATATCCCTACCTAAATAAAGCAAAAACAAGGAACATTTCGTACTAAAAGATCCA TCCAGTTACAGTAGCCAAATATTTTCATTCGAGTTTGTGCATAGTATTAGCAGATTAAATCATC AGAAGTGAAGTGTGGAATTAGCAGCAGCTGAGAGATATTACCTGTTTCCCCTGATCTTGAACCA GGTCTCGGCGCA

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.236597763

Conservation Information
Conserved circRNAs	NA
PMCS	0.236597763

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						this study

circRNA

Detail information of Os01g0850200_circ_g.1

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