Plant Circular RNA Database

Detail information of Os07g0413700_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os07g0413700_circ_g.2
					
						ID in PlantcircBase
						osa_circ_033502
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 13029457-13031950  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os07g0413700						
					
						Parent gene annotation
						
							Similar to Poly(ADP)-ribose polymerase (EC 2.4.2.30). (Os07t0413
700-01);Similar to Poly. (Os07t0413700-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os07g0413700_circ_g.1 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0413700-01:5

General Information
CircRNA Name	Os07g0413700_circ_g.2
ID in PlantcircBase	osa_circ_033502
Alias	NA
Organism	Oryza sativa
Position	chr7: 13029457-13031950 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os07g0413700
Parent gene annotation	Similar to Poly(ADP)-ribose polymerase (EC 2.4.2.30). (Os07t0413 700-01);Similar to Poly. (Os07t0413700-02)
Parent gene strand	+
Alternative splicing	Os07g0413700_circ_g.1
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0413700-01:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ACATTCCTCTAAACTAATCATGTAATCCAACTACTGTAGGATGGATGGAAACAGAAGCTGAAAG
ATGCTGGTGCCAACTTTAATGCCACAGTTACCAAAGgttcgtgtttcatctaagcttgaagggc
aaggttggtatcacgccagctgttttctggagatgtccccagctgcaactgttgagaatttctc
aggctggg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 886
Transcript exons: 13029457-13029622,13029701-13030004,13030734-13030929,13
031043-13031201,13031890-13031950
GTTCGTGTTTCATCTAAGCTTGAAGGGCAAGGTTGGTATCACGCCAGCTGTTTTCTGGAGATGT
CCCCAGCTGCAACTGTTGAGAATTTCTCAGGCTGGGAGATCCTGTCGCATGAGGATAAAAGAGC
TGTTCTTGATCTTGTTAAGAAAGATGCCCCCAGCTCAGGGCAAACATCTTCTAAGGGTTCCAAG
CGCAAGAATAATCAGAATGATATACACGACTGCAAAGCTCCCAAGATAATCAGGAGTATATCAG
AAGGCACAGCAGAAGATAAAGGGAAAGCTGTTGTATCACATGATTCCAATGCTAATTCTTCTGA
TCTTCAAGAAAAGCTTAAAGAGCAGAGTGACACACTTTGGAAATTGAAGGATGAACTTAAGAAG
CATGTGTCAACTGCTGAACTAAGGAACATGCTCGAAGCAAATGGGCAGGATACATCTGGGCCAG
AGCGGCATCTATTAGACCGTTGTGCTGATGGGATGCTTTTTGGAGCATTGGGTACTTGCCCAGT
TTGTTCTAGCTTCCTATACTATCATGGTGGCCAGTATCATTGCAGTGGCTATGTGTCAGAATGG
TCCAAGTGTACATACTCTACGACAGAACCCGTGCGCAGTAAAAAGAAATGGAAAATTCCTGACG
AAATGGATAATGGTTATCTTACAAAGTGGTTCAAGTCTCAAAAGGCTAAGAAACCAGAGAGAGT
TCTTCCGCCAATGTCACCTGAGAAATCATTGTGCCAATCAACCCAGCAAAACCGATCTTTCCTT
AGTGAAGGACTGGATAAATTGAGAGTTTCTATAGTAGGACAATCTAAAGATGTGGTTGATGGAT
GGAAACAGAAGCTGAAAGATGCTGGTGCCAACTTTAATGCCACAGTTACCAAAG
						
					

						Genomic sequence
						
							GTTCGTGTTTCATCTAAGCTTGAAGGGCAAGGTTGGTATCACGCCAGCTGTTTTCTGGAGATGT
CCCCAGCTGCAACTGTTGAGAATTTCTCAGGCTGGGAGATCCTGTCGCATGAGGATAAAAGAGC
TGTTCTTGATCTTGTTAAGAAAGATGCCCCCAGCTCAGGTAATGAAACATGGGCATCAAATTTT
CTTCGCGCCACTTCGTAATCTGACTTGATATTTTGTATTGTTGTTTCTCAAGGGCAAACATCTT
CTAAGGGTTCCAAGCGCAAGAATAATCAGAATGATATACACGACTGCAAAGCTCCCAAGATAAT
CAGGAGTATATCAGAAGGCACAGCAGAAGATAAAGGGAAAGCTGTTGTATCACATGATTCCAAT
GCTAATTCTTCTGATCTTCAAGAAAAGCTTAAAGAGCAGAGTGACACACTTTGGAAATTGAAGG
ATGAACTTAAGAAGCATGTGTCAACTGCTGAACTAAGGAACATGCTCGAAGCAAATGGGCAGGA
TACATCTGGGCCAGAGCGGCATCTATTAGACCGTTGGTAATATTGCATGCTATTTGTGAAATGG
TTTTTAACTTCCTGGCTTCCTGCACTACATTATTTCCATCCAATGAGTAATTGATATTTAAACA
AACTGCACTACAAGGATCCCGCATATAAATATATCCTTGGCCAGTTGGCCGATGCTACTTGATA
GAGGAGGGTACGATTATAACTGATGATGAATGGTACTAGTGTACGAAATTTGTCAGGATAGTTG
TTCCCCAAGACCCCAATTGGTCATCTATGTAATTTTTTGTCGCTAGATTTATTTTCTGCTTGCT
TTCTGGATCCCAAATCCCAGTTGTAACATCCTGGTTATAGGGTTTGTGATACTGATCGCTTAGT
GGAATTCAGAATTGTCACCGTAACCTAATGATTGCACACTATTTGCTTTGGTTCTTTTGTAATC
TGGTTCATGTATACAATTATTATTTCCTTAAAAGTGGCTATACCTTTTCTTTCTAAAAAACACA
TTTTAAAAATTTGATGTGTGCAGAGAAATTTCAAAGTCAGGCAGCACTTAAGATATTTGTTTTC
AGGCAAAAATTGTTCAATAGTATTTAGGTCTGAATTTTTTATGTATAATTCAAGGAAGACAAAC
ATTATTGATTGCATAATAAGCTTTACAATATTGTTGGTTGCGTAGACCTGCTTGTGGCATTTCC
TTGTTTCATCTCACATAGAAGTCAGTACACTTCGTCGCTAACTTTCTTCCTCGTCTGGCAGTGC
TGATGGGATGCTTTTTGGAGCATTGGGTACTTGCCCAGTTTGTTCTAGCTTCCTATACTATCAT
GGTGGCCAGTATCATTGCAGTGGCTATGTGTCAGAATGGTCCAAGTGTACATACTCTACGACAG
AACCCGTGCGCAGTAAAAAGAAATGGAAAATTCCTGACGAAATGGATAATGGTTATCTTACAAA
GGTATGACTATGGCTCCCCACCCCCACCCCCACCCCCACCCAAACCCAAAAGAATATCGTTCTT
AATGCTTGGTTTCTACAGTTGAGGTAAGCAAATATGTATGTATCTTGCAGTGGTTCAAGTCTCA
AAAGGCTAAGAAACCAGAGAGAGTTCTTCCGCCAATGTCACCTGAGAAATCATTGTGCCAATCA
ACCCAGCAAAACCGATCTTTCCTTAGTGAAGGACTGGATAAATTGAGAGTTTCTATAGTAGGAC
AATCTAAAGATGTGGTTGTAAGTGATCTTTTACTTTTTGGTACAGTTATCCTCAGGTTCTCTTG
TGAGTTGTGTTCGTTAAAGCAAGCACCAATTATGCCATGACCTTGCTGCATGTTGTGGCATGCA
CCAGACGCCCTTTATTTTTTCCAATCACAGTTACTTTGCTTACATTGTTATCCAGATTGATTCT
TACCATATTATACAGATTATATATATTATGCATATTTGTTGTGTGGCTTGTTGACATGAAATTG
GAAAGTGCTCAACTGTACATGCTTCATATATTTGTTTGTTTAAGTCAATTCCTTGAAGATAGCT
AGTTTAGTTTGTTAATTTATTCCTTGAGTTCCTCGATTATTTCTTTAATCTCCAAAAATTTTAA
TCCATGGAATATGCAGAGTGACCACATTTAGATTGCAGAGCAAAGGTTAGGAGAGTGTAGGTTT
TTTCCCTATGTACTTGATTCAGTTCATGTTAAATTCATGTCATTTGTTGAATAATAGATCAAAT
TTTATATGATCTAGCATGCTGCTTTTGCATCAAGTGGTAAGATAGATTTGCAATTATTTGCATG
GGATACTGTTTTCTTTTATTTTTTCTTCTCTGCTGATCAGTTATTGGGCTATACATTTTTCTTT
TTCTTGTTTTTTGGTTTGTACTTTGTACATTCCTCTAAACTAATCATGTAATCCAACTACTGTA
GGATGGATGGAAACAGAAGCTGAAAGATGCTGGTGCCAACTTTAATGCCACAGTTACCAAAG
						
					

			
		

Sequences
Splice junction sequence	ACATTCCTCTAAACTAATCATGTAATCCAACTACTGTAGGATGGATGGAAACAGAAGCTGAAAG ATGCTGGTGCCAACTTTAATGCCACAGTTACCAAAGgttcgtgtttcatctaagcttgaagggc aaggttggtatcacgccagctgttttctggagatgtccccagctgcaactgttgagaatttctc aggctggg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 886 Transcript exons: 13029457-13029622,13029701-13030004,13030734-13030929,13 031043-13031201,13031890-13031950 GTTCGTGTTTCATCTAAGCTTGAAGGGCAAGGTTGGTATCACGCCAGCTGTTTTCTGGAGATGT CCCCAGCTGCAACTGTTGAGAATTTCTCAGGCTGGGAGATCCTGTCGCATGAGGATAAAAGAGC TGTTCTTGATCTTGTTAAGAAAGATGCCCCCAGCTCAGGGCAAACATCTTCTAAGGGTTCCAAG CGCAAGAATAATCAGAATGATATACACGACTGCAAAGCTCCCAAGATAATCAGGAGTATATCAG AAGGCACAGCAGAAGATAAAGGGAAAGCTGTTGTATCACATGATTCCAATGCTAATTCTTCTGA TCTTCAAGAAAAGCTTAAAGAGCAGAGTGACACACTTTGGAAATTGAAGGATGAACTTAAGAAG CATGTGTCAACTGCTGAACTAAGGAACATGCTCGAAGCAAATGGGCAGGATACATCTGGGCCAG AGCGGCATCTATTAGACCGTTGTGCTGATGGGATGCTTTTTGGAGCATTGGGTACTTGCCCAGT TTGTTCTAGCTTCCTATACTATCATGGTGGCCAGTATCATTGCAGTGGCTATGTGTCAGAATGG TCCAAGTGTACATACTCTACGACAGAACCCGTGCGCAGTAAAAAGAAATGGAAAATTCCTGACG AAATGGATAATGGTTATCTTACAAAGTGGTTCAAGTCTCAAAAGGCTAAGAAACCAGAGAGAGT TCTTCCGCCAATGTCACCTGAGAAATCATTGTGCCAATCAACCCAGCAAAACCGATCTTTCCTT AGTGAAGGACTGGATAAATTGAGAGTTTCTATAGTAGGACAATCTAAAGATGTGGTTGATGGAT GGAAACAGAAGCTGAAAGATGCTGGTGCCAACTTTAATGCCACAGTTACCAAAG
Genomic sequence	GTTCGTGTTTCATCTAAGCTTGAAGGGCAAGGTTGGTATCACGCCAGCTGTTTTCTGGAGATGT CCCCAGCTGCAACTGTTGAGAATTTCTCAGGCTGGGAGATCCTGTCGCATGAGGATAAAAGAGC TGTTCTTGATCTTGTTAAGAAAGATGCCCCCAGCTCAGGTAATGAAACATGGGCATCAAATTTT CTTCGCGCCACTTCGTAATCTGACTTGATATTTTGTATTGTTGTTTCTCAAGGGCAAACATCTT CTAAGGGTTCCAAGCGCAAGAATAATCAGAATGATATACACGACTGCAAAGCTCCCAAGATAAT CAGGAGTATATCAGAAGGCACAGCAGAAGATAAAGGGAAAGCTGTTGTATCACATGATTCCAAT GCTAATTCTTCTGATCTTCAAGAAAAGCTTAAAGAGCAGAGTGACACACTTTGGAAATTGAAGG ATGAACTTAAGAAGCATGTGTCAACTGCTGAACTAAGGAACATGCTCGAAGCAAATGGGCAGGA TACATCTGGGCCAGAGCGGCATCTATTAGACCGTTGGTAATATTGCATGCTATTTGTGAAATGG TTTTTAACTTCCTGGCTTCCTGCACTACATTATTTCCATCCAATGAGTAATTGATATTTAAACA AACTGCACTACAAGGATCCCGCATATAAATATATCCTTGGCCAGTTGGCCGATGCTACTTGATA GAGGAGGGTACGATTATAACTGATGATGAATGGTACTAGTGTACGAAATTTGTCAGGATAGTTG TTCCCCAAGACCCCAATTGGTCATCTATGTAATTTTTTGTCGCTAGATTTATTTTCTGCTTGCT TTCTGGATCCCAAATCCCAGTTGTAACATCCTGGTTATAGGGTTTGTGATACTGATCGCTTAGT GGAATTCAGAATTGTCACCGTAACCTAATGATTGCACACTATTTGCTTTGGTTCTTTTGTAATC TGGTTCATGTATACAATTATTATTTCCTTAAAAGTGGCTATACCTTTTCTTTCTAAAAAACACA TTTTAAAAATTTGATGTGTGCAGAGAAATTTCAAAGTCAGGCAGCACTTAAGATATTTGTTTTC AGGCAAAAATTGTTCAATAGTATTTAGGTCTGAATTTTTTATGTATAATTCAAGGAAGACAAAC ATTATTGATTGCATAATAAGCTTTACAATATTGTTGGTTGCGTAGACCTGCTTGTGGCATTTCC TTGTTTCATCTCACATAGAAGTCAGTACACTTCGTCGCTAACTTTCTTCCTCGTCTGGCAGTGC TGATGGGATGCTTTTTGGAGCATTGGGTACTTGCCCAGTTTGTTCTAGCTTCCTATACTATCAT GGTGGCCAGTATCATTGCAGTGGCTATGTGTCAGAATGGTCCAAGTGTACATACTCTACGACAG AACCCGTGCGCAGTAAAAAGAAATGGAAAATTCCTGACGAAATGGATAATGGTTATCTTACAAA GGTATGACTATGGCTCCCCACCCCCACCCCCACCCCCACCCAAACCCAAAAGAATATCGTTCTT AATGCTTGGTTTCTACAGTTGAGGTAAGCAAATATGTATGTATCTTGCAGTGGTTCAAGTCTCA AAAGGCTAAGAAACCAGAGAGAGTTCTTCCGCCAATGTCACCTGAGAAATCATTGTGCCAATCA ACCCAGCAAAACCGATCTTTCCTTAGTGAAGGACTGGATAAATTGAGAGTTTCTATAGTAGGAC AATCTAAAGATGTGGTTGTAAGTGATCTTTTACTTTTTGGTACAGTTATCCTCAGGTTCTCTTG TGAGTTGTGTTCGTTAAAGCAAGCACCAATTATGCCATGACCTTGCTGCATGTTGTGGCATGCA CCAGACGCCCTTTATTTTTTCCAATCACAGTTACTTTGCTTACATTGTTATCCAGATTGATTCT TACCATATTATACAGATTATATATATTATGCATATTTGTTGTGTGGCTTGTTGACATGAAATTG GAAAGTGCTCAACTGTACATGCTTCATATATTTGTTTGTTTAAGTCAATTCCTTGAAGATAGCT AGTTTAGTTTGTTAATTTATTCCTTGAGTTCCTCGATTATTTCTTTAATCTCCAAAAATTTTAA TCCATGGAATATGCAGAGTGACCACATTTAGATTGCAGAGCAAAGGTTAGGAGAGTGTAGGTTT TTTCCCTATGTACTTGATTCAGTTCATGTTAAATTCATGTCATTTGTTGAATAATAGATCAAAT TTTATATGATCTAGCATGCTGCTTTTGCATCAAGTGGTAAGATAGATTTGCAATTATTTGCATG GGATACTGTTTTCTTTTATTTTTTCTTCTCTGCTGATCAGTTATTGGGCTATACATTTTTCTTT TTCTTGTTTTTTGGTTTGTACTTTGTACATTCCTCTAAACTAATCATGTAATCCAACTACTGTA GGATGGATGGAAACAGAAGCTGAAAGATGCTGGTGCCAACTTTAATGCCACAGTTACCAAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.212614552

Conservation Information
Conserved circRNAs	NA
PMCS	0.212614552

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							13029518-13029470(+)
13031916-13029470(+)
13029471-13031056(-)
						
						Potential amino acid sequence
						
							MSPAATVENFSGWEILSHEDKRAVLDLVKKDAPSSGQTSSKGSKRKNNQNDIHDCKAPKIIRSI
SEGTAEDKGKAVVSHDSNANSSDLQEKLKEQSDTLWKLKDELKKHVSTAELRNMLEANGQDTSG
PERHLLDRCADGMLFGALGTCPVCSSFLYYHGGQYHCSGYVSEWSKCTYSTTEPVRSKKKWKIP
DEMDNGYLTKWFKSQKAKKPERVLPPMSPEKSLCQSTQQNRSFLSEGLDKLRVSIVGQSKDVVD
GWKQKLKDAGANFNATVTKGSCFI*(+)
MLVPTLMPQLPKVRVSSKLEGQGWYHASCFLEMSPAATVENFSGWEILSHEDKRAVLDLVKKDA
PSSGQTSSKGSKRKNNQNDIHDCKAPKIIRSISEGTAEDKGKAVVSHDSNANSSDLQEKLKEQS
DTLWKLKDELKKHVSTAELRNMLEANGQDTSGPERHLLDRCADGMLFGALGTCPVCSSFLYYHG
GQYHCSGYVSEWSKCTYSTTEPVRSKKKWKIPDEMDNGYLTKWFKSQKAKKPERVLPPMSPEKS
LCQSTQQNRSFLSEGLDKLRVSIVGQSKDVVDGWKQKLKDAGANFNATVTKGSCFI*(+)
MKHEPLVTVALKLAPASFSFCFHPSTTSLDCPTIETLNLSSPSLRKDRFCWVDWHNDFSGDIGG
RTLSGFLAF*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	13029518-13029470(+) 13031916-13029470(+) 13029471-13031056(-)
Potential amino acid sequence	MSPAATVENFSGWEILSHEDKRAVLDLVKKDAPSSGQTSSKGSKRKNNQNDIHDCKAPKIIRSI SEGTAEDKGKAVVSHDSNANSSDLQEKLKEQSDTLWKLKDELKKHVSTAELRNMLEANGQDTSG PERHLLDRCADGMLFGALGTCPVCSSFLYYHGGQYHCSGYVSEWSKCTYSTTEPVRSKKKWKIP DEMDNGYLTKWFKSQKAKKPERVLPPMSPEKSLCQSTQQNRSFLSEGLDKLRVSIVGQSKDVVD GWKQKLKDAGANFNATVTKGSCFI(+) MLVPTLMPQLPKVRVSSKLEGQGWYHASCFLEMSPAATVENFSGWEILSHEDKRAVLDLVKKDA PSSGQTSSKGSKRKNNQNDIHDCKAPKIIRSISEGTAEDKGKAVVSHDSNANSSDLQEKLKEQS DTLWKLKDELKKHVSTAELRNMLEANGQDTSGPERHLLDRCADGMLFGALGTCPVCSSFLYYHG GQYHCSGYVSEWSKCTYSTTEPVRSKKKWKIPDEMDNGYLTKWFKSQKAKKPERVLPPMSPEKS LCQSTQQNRSFLSEGLDKLRVSIVGQSKDVVDGWKQKLKDAGANFNATVTKGSCFI(+) MKHEPLVTVALKLAPASFSFCFHPSTTSLDCPTIETLNLSSPSLRKDRFCWVDWHNDFSGDIGG RTLSGFLAF*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os07g0413700_circ_g.2

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