Detail information of BGIOSGA014820_circ_g.1


General Information
CircRNA Name BGIOSGA014820_circ_g.1
ID in PlantcircBase osi_circ_014487
Alias Chr04:25088323_25090185(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 23036775-23038637  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA014820
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA014820-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCAGTAATTTGTACTAGATTAGATTGAACCTGTAAGAAATAATTGTCTCTGACTGCTGGAAAGT
CATCCCGAATATACAAAAGGGCTCCAGATATGACACcctgaagaccagctccagcaaaaaatgc
tagccttagttcctttgacttgaaaatgtccaaatagctcccagtaccgtcagactgaaattca
tgcattga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGAAGACCAGCTCCAGCAAAAAATGCTAGCCTTAGTTCCTTTGACTTGAAAATGTCCAAATA
GCTCCCAGTACCGTCAGACTGAAATTCATGCATTGAAGAAGAAGCAAGAAGCTCTACCTCTTCC
TCTAGACGGTCAGAGTCATAAATCTTCTCTAGGACAGAAATAGCTTTTGCTTTCTCATCCTGTA
AAGAAAAGTTAATGTAACAACAAAATGCAGATAAAAGGAGATAATACATGACTGAATAAAAGCT
TAAAATATAACCTTCCAGAAAAGCCAACGGGGAGATTCTGGCAAAAAAAGCATCAGAACAAACT
GTAGAATTGCAGGCACAGCAGCAACTCCGAGCATCCAGCGCCATGTTCCAGGAACCTATGACAT
GTAGCATGCATATCATTGCAAGTTTGCAACTACTCGTACTAATGTATTACCAGCTTACGAATAT
CTCCACTATAACTCTCAAGAAAGATGGTTGTATATCTTCTTTTATAGGACATCTTATATTGTTT
TTTAATAATGCAGGATTTGTTATGCATCAAGATTATGAAACCCCAAGTCAAATTATAAGGAGAT
GCACAATGATAATTTAATATTGTTGGTCATTGCTTTATAAGGTTCTACTTGACTGAATTATTTG
ATTCAAATGACACATAATTTTTCATCCTCAGGTAAGTAAAGTGGTACTTCAAGAACAAACAGTG
AATAGGCTACTGAAATCACAAAATCATATGATGTGCCAAGGGATAAAATGTGCATTTCAGATAA
ATACAGGAAGTTCATTTAAGAAAAAAGAAAACAGAATGATGTATATACTGCAGTGAATTTCAGA
AACAGAAAGATGGAGCATTAACACTAGAGTGGCTACGCACCAAACAACACCTTGTTGGTGATTC
ATCCATTGCTGCTGGCAAGGAAGCTGACTCTTGTTCATTGCTAATTAAGTGTTACACAGTTAAC
TAGCACCAACAGGAATGTTAATACCATAAAAGGTAAATATATGAAAAGGAGAAAAAGGTAGTAT
AAACATGGCATTGATGCTGAAATCCTTTCTCAAGGGAGTTCATCTTGAATAACATAACATGTGC
AGCTTTTCCATGGTTCTTGTGCAAGAGTACCGACCCCAAGCTTGTTATTTTTTCATTAAAGATA
TGATGCGAGCTCATATATATACTTAGTTGCAGTTAACAGTTAAGTTCCCCATCGCAGTGCAAGA
CCTGGTTTGTGGAAGCTCAATAAAAAAATTTCAACTGCAATGCTTTCAGCTTGAACTTGTTCCG
TTTATAGTTGAATGTTAAAAGAACTTAAACTGAAAACTGCTAATGTGTAGGAATAATGGAATAA
AATATGCTAATTAAATGGAGGTTGAATGTCTACCTCAGTAAAGCCAAGATTGATGAGGTAGGAG
AAGAATTGACCACCAGTAATCATGAGTACATTAGTTGACACCAAACCTCCCCTAATTTCCGAAG
GAGCAGCTTCAGCAATGTAAACTGGCGCTGTGACTGATGCTATACCCACACCCAAGCCAACAAG
AAGCCTTCCAAGAATCAGAATGTAAGGACCACCAGCAGCACACATAACAAGTGAGCCAAGTGCA
AACAGCATGTCAGCCACAAGAGTAGACTTCCTACGGCCGTATGTATCATTGATCCAGCCGCCGC
CAGCTGCTCCAATGATGGCTCCTACCAATGCCATGCTAACGATTGTCTCCTACGGAAGAACCAA
AATCAGTTGGTGCAGGCGTGCCATATGGTTAATGACCAGTAATTTGTACTAGATTAGATTGAAC
CTGTAAGAAATAATTGTCTCTGACTGCTGGAAAGTCATCCCGAATATACAAAAGGGCTCCAGAT
ATGACAC
Conservation Information
Conserved circRNAs osa_circ_024345
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021