Detail information of Zm00001d014899_circ_g.4


General Information
CircRNA Name Zm00001d014899_circ_g.4
ID in PlantcircBase zma_circ_000287
Alias NA
Organism Zea mays
Position chr5: 67329253-67329365  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method SMALT, Segemehl
Parent gene Zm00001d014899
Parent gene annotation protein_coding
Parent gene strand +
Alternative splicing Zm00001d014899_circ_g.1 Zm00001d014899_circ_g.2 Zm00001d014899_circ_g.3
Support reads 2
Tissues shoot
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Zm00001d014899_T001:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGGCGCTGTCATCGTGCATATCAGAGCTCAACTACCATGGCCGCTGGTTATAACCgcgaagag
cttgttcgaagatgtgctgtatgtggaagcagacaacaagatggtgagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCGAAGAGCTTGTTCGAAGATGTGCTGTATGTGGAAGCAGACAACAAGATGGTGAGGGAGGCGC
TGTCATCGTGCATATCAGAGCTCAACTACCATGGCCGCTGGTTATAACC
Conservation Information
Conserved circRNAs NA
PMCS 0.261006289
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015