Detail information of AT3G02470_circ_g.1


General Information
CircRNA Name AT3G02470_circ_g.1
ID in PlantcircBase ath_circ_019297
Alias NA
Organism Arabidpsis thaliana
Position chr3: 509087-509201  JBrowse»
Reference genome TAIR10.38
Type   ui-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT3G02470
Parent gene annotation S-adenosylmethionine decarboxylase proenzyme 1
Parent gene strand +
Alternative splicing AT3G02470_circ_g.2 AT3G02470_circ_g.3 AT3G02470_circ_g.4 AT3G02470_circ_g.5 AT3G02470_circ_g.6
Support reads 3
Tissues root, leaf
Exon boundary   No-Yes
Splicing signals   GT-TC
Number of exons covered AT3G02470.1:1
AT3G02470.4:1
AT3G02470.3:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTAGGGTTTTCTCTTTTCTCGAAAGTCTTGCGGTTTTCTGAATCATCTCTATCTGacgaacg
catctcattgcttcatcattaccaaatcatcaacttaatcgtttctctcaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ACGAACGCATCTCATTGCTTCATCATTACCAAATCATCAACTTAATCGTTTCTCTCAAATTTAG
GGTTTTCTCTTTTCTCGAAAGTCTTGCGGTTTTCTGAATCATCTCTATCTG
Conservation Information
Conserved circRNAs NA
PMCS 0.174757678
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017