Detail information of Os03g0119500_circ_g.2


General Information
CircRNA Name Os03g0119500_circ_g.2
ID in PlantcircBase osa_circ_017624
Alias Os_ciR2089
Organism Oryza sativa
Position chr3: 1054762-1057827  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os03g0119500
Parent gene annotation Callose synthase, Ovary expansion by affecting vascular cell pat
terning (Os03t0119500-01)
Parent gene strand +
Alternative splicing Os03g0119500_circ_g.1
Support reads 8
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0119500-01:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCATCATTATGGAAAGACATCTTTTGTGGAGCACAGAACTTTTCTTCATCTTTACCATAGCTTT
CATCGCCTTTGGATTTTTTTAGTTATGATGTTTCAGaaagacaatgtgactaatcaacgggagc
atgttgttcacctgttggcaaatgaacagtcccgactggggaaactaccagggaatgaaccggt
atgcatac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 705
Transcript exons: 1054762-1054851,1055102-1055199,1055291-1055408,1056745-
1056870,1056959-1057035,1057122-1057200,1057711-1057827
AAAGACAATGTGACTAATCAACGGGAGCATGTTGTTCACCTGTTGGCAAATGAACAGTCCCGAC
TGGGGAAACTACCAGGGAATGAACCGAAAATCGACGAGGGAGCTGTGCATGTTGTTTTCTCCAA
GTCCCTTGATAACTACATCAAATGGTGTAATTATTTGCCGCTTCCCCCTGTCTGGAACAACACC
GAGTCATTGACGAAAGAAAAGAAGTTGCTATATGTGTGCTTATACTACCTTATTTGGGGAGAGG
CTGCTAACGTACGATTTCTTCCAGAAGGTTTATGCTATATATTTCATCATCTAGCAAGAGAACT
GGAGGAGATTATACGGAGACAGACTGCAGAGCCTGCTGAAAGCTGCATTTCAAATGGTGGCGTA
TCATTTCTTGACCAAGTCATTTCTCCTATGTATGAAATCATCGCAGCTGAAGCAGCCAACAATG
ACAATGGGCGAGCGCCACATTCTGCGTGGAGAAACTATGATGATTTCAATGAGTTCTTCTGGTC
TCCGAAGTGTTTTCAGCTTGGTTGGCCATGGAAGATCAGCAATCCATTTTTCTCTAAACCTAGT
AGGAAAGAGAAGGGCTTGGTGGGTAGGAATCATCATTATGGAAAGACATCTTTTGTGGAGCACA
GAACTTTTCTTCATCTTTACCATAGCTTTCATCGCCTTTGGATTTTTTTAGTTATGATGTTTCA
G

Genomic sequence AAAGACAATGTGACTAATCAACGGGAGCATGTTGTTCACCTGTTGGCAAATGAACAGTCCCGAC
TGGGGAAACTACCAGGGAATGAACCGGTATGCATACTTTGCACCCTAATTTTTTATGTCGTACA
ATATTTTTTTTGGGGGTAGAATTGGTTCCATGGCATAGAGTGATCCCTATTCTAGATATTTACT
GGCAAAAGTTCTGGGTACTTTTTAATACCACTGAAATATTGCACCGTTTAATACCAGGCCTGGT
GCAAAGAGTACTCAATTGCATGTTGCTTTATGTTGTTAATATTTTCATCCTTAGTTCGTTAGCA
TTGTTGTTATTTGTTGGCAGAAAATCGACGAGGGAGCTGTGCATGTTGTTTTCTCCAAGTCCCT
TGATAACTACATCAAATGGTGTAATTATTTGCCGCTTCCCCCTGTCTGGAACAAGTATGATTTG
TCATGTTGATCAACATATTTAATTTCTTATTCCTGTCTATATCTTATTTATCACCAAGAGATTT
ACCTGATTTTCTCTTAGCACCGAGTCATTGACGAAAGAAAAGAAGTTGCTATATGTGTGCTTAT
ACTACCTTATTTGGGGAGAGGCTGCTAACGTACGATTTCTTCCAGAAGGTTTATGCTATATATT
TCATCATGTAAGTTTGCAGAAGATTCTGCTCTGTACTATTTTTTGTGCATGCTTAATTGATTAT
TGCAAATGTTTACAATCGTGTAGTATTGCACCCAAAGAAGCTTTAGGTCGATCTGCGCCTGTTT
TTCTACGAACATGCCTATGCCAGTTTAACATACAAAAATATTCTTCTTTGGTTCTTCCCTCCCT
GATCTACTACTTTGTTGCCAAATTAGCGCACTGTTGTCTATGCTTGGAATTTGAATTGTTTTCC
CCTAATCATTAGCATATTCTTCATTTTCAGTTTCTAAAGTGATCATGTCTTCTTCTAAGTAAAG
AAATCTGCAAAATTCTGTTCATTCTGATGGTCTTCAATTCTTCTCTCTCTGTAGTCACCGATAC
TCGAAACACTTCTGGCCAAACTTTTCAAAGATTGACTATCAGTTTCCTTTAAATATTTTGAATT
GGAATATGAAAGTCATGTGTAGATTTGTCTGTTTAGAGACAATATAATTTCAATATGTTTTTAT
AGCGTATAACAATAGAAATACTGTTCAAAATAATACTTATGAGGCCATTCAGATGTCCAAAATG
ACAAATATTTGTGATGTAGGGAATGGTTGTTAGTGTGACATATCCAATTGATATTGAATAACTA
ATCACCTTTGACTAACTTAATTTGTATAAGATATCAAATACTACCTCTGAAAATATAAAAAAAA
AAGGGCTTGGACACAGGCATTAAAGAAGTAGGTGGAATTAAATAGGGTAAGATTGTGATTGGAT
GAGAAAAGGAAGTAGGTGGAGAAATTAAATGGGGGAAGGTTGTGATTAGTTGAGAAGAGAATGT
AGGTGTTAGAACTTCAATGGTTACTCTCATTGAGAAGGGGATGGCACTCGAGATGGGGCAATTT
TCTGGTTTTCTTCATTCACAAAACACAAAGCCATACCTTCCCGAGGGAGGTTGGATACATATAT
ATAACCATAGCTGGCTGCAAGCCTATTGCTGCACCCTCCTAGTCTAAAAATTCGAAATTTGAAT
GGGATGCTGTCCTAGAGGGCATCCAAACTGAATAAAGCATAAAGGAGGCATAAAGGAGATGCTA
ATTGCTGCTGTCCTACTAACCGCAGCTGTCCTAGCAACTGAAAATATGCTAAAGGAGTAGATGC
TGTCCTGAAAAGGTGAAACTACCCAAAAGCAAAAAGAAGAAATCAGGACCAAGGACCAAAGACT
TATCCATCAGTAGGCGGAGAAGTTGCTATATTTCGGAACAAAATTTGAATGCTAGAAGTTACTA
TATTTTTGGATGGAGGGAATATAACTTTTATTGTTGAAATTCATGCTCCTATATTTCTTACAGC
TAGCAAGAGAACTGGAGGAGATTATACGGAGACAGACTGCAGAGCCTGCTGAAAGCTGCATTTC
AAATGGTGGCGTATCATTTCTTGACCAAGTCATTTCTCCTATGTATGAAATCATCGCAGCTGTA
AGTGGGGTATCTGCTTGGAGCTACTTTAGCTTGCTACATTTGGTTGTACTTCTATTGAGTGGTT
TGAATGCTGGGTACTCTACAGGAAGCAGCCAACAATGACAATGGGCGAGCGCCACATTCTGCGT
GGAGAAACTATGATGATTTCAATGAGTTCTTCTGGTTGGTAGATCAATTGAGCTATTGAGTTCC
ATTAATTTGTTGTTATTTTCATTTTTTTCCATAAAGATCCACACTGTCCTTTTCAGGTCTCCGA
AGTGTTTTCAGCTTGGTTGGCCATGGAAGATCAGCAATCCATTTTTCTCTAAACCTAGTAGGAA
AGAGAAGGTTTCTTTCTGCTGATCATATACTTAATTGTTTGTATTTTGGCGGAACTACCAAGCT
AATACTTGGACATCTCAGGATATCTTTTTTTTTTGTTATTTTTGTTGTGCACATCTTAAACATC
ACGTAGTTACTTGGAACACAGGGTTATTCGTGTTGAGGAACCGAGTGCACTACCTATTGAGAAT
ATGGTATACTGGGGAAAGTCTTACTAGGTGCAGAAAAGTGACCCCAAAAAAATTACTAGGTTGA
TGATCTCAATTACATATGAAGCATTAATTACACAACATGAGTATCATGGATATTGCACTGTAGT
TTTGTCCATGGAAGTTCTACAGAACCACCTAAAATTATCTTGCATATATAGGCTATTTGGATTG
AGAGATTAGATCATCCATCCATTCAAGATTTTAGTGGGATGGCCCAATTTTCATTTTTCTACAT
GTGCTTTTGTGGGATGAGGTGGTGAAGACAACCCTTTCCCCCCTTACCAAACAGATGGTTCTTT
TGCAGGGCTTGGTGGGTAGGAATCATCATTATGGAAAGACATCTTTTGTGGAGCACAGAACTTT
TCTTCATCTTTACCATAGCTTTCATCGCCTTTGGATTTTTTTAGTTATGATGTTTCAG
Conservation Information
Conserved circRNAs osi_circ_012927
PMCS 0.2292755
Functional Information
Coding potential Y
Potential coding position 1056851-1057824(+)
Potential amino acid sequence MYEIIAAEAANNDNGRAPHSAWRNYDDFNEFFWSPKCFQLGWPWKISNPFFSKPSRKEKGLVGR
NHHYGKTSFVEHRTFLHLYHSFHRLWIFLVMMFQKDNVTNQREHVVHLLANEQSRLGKLPGNEP
KIDEGAVHVVFSKSLDNYIKWCNYLPLPPVWNNTESLTKEKKLLYVCLYYLIWGEAANVRFLPE
GLCYIFHHLARELEEIIRRQTAEPAESCISNGGVSFLDQVISPMYEIIAAEAANNDNGRAPHSA
WRNYDDFNEFFWSPKCFQLGWPWKISNPFFSKPSRKEKGLVGRNHHYGKTSFVEHRTFLHLYHS
FHRLWIFLVMMFQKDNVTNQREHVVHLLANEQSRLGKLPGNEPKIDEGAVHVVFSKSLDNYIKW
CNYLPLPPVWNNTESLTKEKKLLYVCLYYLIWGEAANVRFLPEGLCYIFHHLARELEEIIRRQT
AEPAESCISNGGVSFLDQVISPMYEIIAAEAANNDNGRAPHSAWRNYDDFNEFFWSPKCFQLGW
PWKISNPFFSKPSRKEKGLVGRNHHYGKTSFVEHRTFLHLYHSFHRLWIFLVMMFQKDNVTNQR
EHVVHLLANEQSRLGKLPGNEPKIDEGAVHVVFSKSLDNYIKWCNYLPLPPVWNNTESLTKEKK
LLYVCLYYLIWGEAANVRFLPEGLCYIFHHLARELEEIIRRQTAEPAESCISNGGVSFLDQVIS
PMYEIIAAEAANNDNGRAPHSAWRNYDDFNEFFWSPKCFQLGWPWKISNPFFSKPSRKEKGLVG
RNHHYGKTSFVEHRTFLHLYHSFHRLWIFLVMMFQ(+)
Sponge-miRNAs osa-miR2105 osa-miR815c
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015