Detail information of AT2G02970_circ_g.2


General Information
CircRNA Name AT2G02970_circ_g.2
ID in PlantcircBase ath_circ_012628
Alias NA
Organism Arabidpsis thaliana
Position chr2: 866106-867029  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene AT2G02970
Parent gene annotation Probable apyrase 6
Parent gene strand -
Alternative splicing AT2G02970_circ_g.1
Support reads 2
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G02970.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATGAAGGAAGCTGTGACTGTAGAGATTGTATGTGACATTTCCAAATGATATTGTACGTGAGAA
CTCAGGAGGCATTGGCTCACTAGACACAAATGTCACcttagaggtgtaaaagaagttttctgtc
gctaaaaatcttcctcgaagcttaggcgtgaaagttgatccaatagaacaatgctgatacgagc
atttctct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTAGAGGTGTAAAAGAAGTTTTCTGTCGCTAAAAATCTTCCTCGAAGCTTAGGCGTGAAAGTT
GATCCAATAGAACAATGCTGATACGAGCATTTCTCTGCACTCAAAAGTTTGAGTAGAAATCAGT
ATCTATTAAAGACAACAAATAAACTAATACAAGGAATGAAAATCCAGCAATAATGATTAATATT
CTACCATTTCCATCTTGCAAGATTGTTAGTGCAGCAGATCGACACTGTGAGTAATTACCCCCAG
CTTGAAAAGAATCTGAGAGTCTGCTTTCTTCAGCTAAAAGTCCAGACAAATGCTTTTGTGTGTT
TGCGTCGAGGTTATACCCTTTTGGAGCACAAGGGTCTGTAAATATTTTTTCCCGTGTAGGTTCC
ACAGCTTCAAGAAATAAAACACTGAATGAGTGGAAAGGAAAAGAAACTTTGCTATTGACTTGAA
AACGTAATCTGAACTTTAGAAAATTCCCAATCAGTAATTTGATGATCCATCAATTATACTTATA
TAATCATCAACAGCTTACCTGAATTATGGTCTCTTGAGAGAAGTGAACCCCATAACTTATCATG
TGCAGCATTCTGAAACGGAAAAAAAAATTAATAGCCTCGAGGACATTGCCAAAAGATGAAATCC
TTCATTCTAAAGATTTCAGGGAGGGAAACAAAAGATCAGAAACAATAGTTACGGAGACAATTGT
TTGGTCAGTTGGATTAAGTTCCCATTCAACGATTTTAAAAAGGAATAAACTTGTTTCTTGTGTC
AAGTTGTGAAATCTATTCCAAACACATACACTGCTTAATAGAAAATACCTGCCCAAAATGAAGG
AAGCTGTGACTGTAGAGATTGTATGTGACATTTCCAAATGATATTGTACGTGAGAACTCAGGAG
GCATTGGCTCACTAGACACAAATGTCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.13613851
Functional Information
Coding potential Y
Potential coding position 867006-866108(-)
Potential amino acid sequence MPPEFSRTISFGNVTYNLYSHSFLHFGQNAAHDKLWGSLLSRDHNSAVEPTREKIFTDPCAPKG
YNLDANTQKHLSGLLAEESRLSDSFQAGGNYSQCRSAALTILQDGNEKCSYQHCSIGSTFTPKL
RGRFLATENFFYTSKVTFVSSEPMPPEFSRTISFGNVTYNLYSHSFLHFGQNAAHDKLWGSLLS
RDHNSAVEPTREKIFTDPCAPKGYNLDANTQKHLSGLLAEESRLSDSFQAGGNYSQCRSAALTI
LQDGNEKCSYQHCSIGSTFTPKLRGRFLATENFFYTSKVTFVSSEPMPPEFSRTISFGNVTYNL
YSHSFLHFGQNAAHDKLWGSLLSRDHNSAVEPTREKIFTDPCAPKGYNLDANTQKHLSGLLAEE
SRLSDSFQAGGNYSQCRSAALTILQDGNEKCSYQHCSIGSTFTPKLRGRFLATENFFYTSKVTF
VSSEPMPPEFSRTISFGNVTYNLYSHSFLHFGQNAAHDKLWGSLLSRDHNSAVEPTREKIFTDP
CAPKGYNLDANTQKHLSGLLAEESRLSDSFQAGGNYSQCRSAALTILQDGNEKCSYQHCSIGST
FTPKLRGRFLATENFFYTSK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017