Detail information of Os05g0545400_circ_g.1


General Information
CircRNA Name Os05g0545400_circ_g.1
ID in PlantcircBase osa_circ_042170
Alias NA
Organism Oryza sativa
Position chr5: 27076251-27076390  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os05g0545400
Parent gene annotation Serine/threonine protein kinase domain containing protein. (Os05
t0545400-01)
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os05t0545400-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGGCGCAGGCCAGTGAACCGATCCTCTCGGCCGTGCTCTGCGACAGCTCGTCGTCTTCCTCCTC
GTCGGTgattcttcggtaggggtggagatcacatcgatccagccgtcgtcggagtcccaatccg
gcagcgacgagg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 140
Transcript exons: 27076251-27076390
GATTCTTCGGTAGGGGTGGAGATCACATCGATCCAGCCGTCGTCGGAGTCCCAATCCGGCAGCG
ACGAGGCGGCGCAGGCCAGTGAACCGATCCTCTCGGCCGTGCTCTGCGACAGCTCGTCGTCTTC
CTCCTCGTCGGT

Genomic sequence GATTCTTCGGTAGGGGTGGAGATCACATCGATCCAGCCGTCGTCGGAGTCCCAATCCGGCAGCG
ACGAGGCGGCGCAGGCCAGTGAACCGATCCTCTCGGCCGTGCTCTGCGACAGCTCGTCGTCTTC
CTCCTCGTCGGT
Conservation Information
Conserved circRNAs NA
PMCS 0.189878869
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study