Detail information of BGIOSGA022100_circ_igg.1


General Information
CircRNA Name BGIOSGA022100_circ_igg.1
ID in PlantcircBase osi_circ_016710
Alias Chr06:238886_243397(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr6: 421012-425522  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA022100_circ_igg.2 BGIOSGA022100_circ_g.1 BGIOSGA022100_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAAGTTTGTGGACATTGAAATGGTCTCTCGCACAACTACAAGCTTCCCCCCAAATCCGAATGT
AACCAAAGCATGTGGTGGGCGTCCAGCTGATGACCTcctcatcttttacccttttgttcaggta
tcagagctctacctcgtgaagatcctcgcccaggccattgttgaattgaagtgatgagttacta
ctggaacg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCATCTTTTACCCTTTTGTTCAGGTATCAGAGCTCTACCTCGTGAAGATCCTCGCCCAGGCC
ATTGTTGAATTGAAGTGATGAGTTACTACTGGAACGGCTGTGGGATTGTTTCTGTCCAGGAATC
AACGGAGACTGCATCATGGTCCGTTGTCCATCTGGTGATCTCGAAACAGCATTGCCGCTCAACT
GCTCTGAATATGCTCCACTCCATGATGCTGCTCGTGACCTTGAGAATGAGCTGCCATTCCCACT
GCCAGATGGGGTCATGATGTTGTCCATACTTGGATACCGCTGAATATTTGATTGAACTGGTATT
GGTTGTACTGATGGTGGTGGCGAAGCCGAGGATTCCCGCAGAGCTATCGTGGAAGATGGTTGAT
CCTGATGAACATTGACTGTTGGGTCAGGGATCTGCTCTGACGCAACAGTAGCTGGAGTTGGCAC
AAAGAAAGTGGCACCAGACAGTGGATTCATGGATGGGGTGGCTGGTTTATTATATGACGGTCCA
GTGGCACTTGCACCACCCTTGTTAAATGTGTCGACGTATCTACATGGGGGCAAGGAAATGATAT
AAGCCACTTGGTATATAAAGCAAACAGCGGCAATAACTAAACAAATTACCTTGATCTAACACCC
ATCCGTCCACGTGCTGAGAATTGGTTCTGGCTAGGTGGCATTGGTGGCATCCCTGAACTAGGCC
CAGAAGGATTCAAAGGCCTTGCTTCTGAAAATCCATTAGCAGTATAACTTACACTGCCTGGGCC
ATTCGAACTCTGATCTGGAATACCGTTCTGGAACAAGGCCTTTGTTGGAGGTGGGGGAAGGGGA
GGCTCCTCAGCAGGTATGTCAGCACCTTCTTCCACCCACCGCTTCAGCTTCTTGTCATAGTAGA
ACTTGTTTTGTTCCCCCAGCTTTGCCTTTAGGGCACAAAAGAATTAGTTGTGTTACACAAATCA
AAAACTCCTGTGACATGCAGTTCGAAACCGGGATCGGATGAATTTAATGTTTTAGCAAGCACCT
GATGATGAGATCTTGAAACAAGTCCCATTGTCTTCTGCAGCAACCATCCAAAACGTGAACTACC
TGAACCTGATGTGCTTTGTGCATTATCTAATCCTGCACCCTGTGAGAGTTCCAATTTCAGAGAA
GAGAAATGAAACACATCAAGAAAACATTCCAGTCTAAGAAGCACCTGGTTGGGGGTTCTGCCAA
AGTCTGGTTCAGAGACACTTCTGTTATGTGTGACTTTCCTGTCAGGGCCAGTATTTCCTGACAT
TTCACTCATAGATTGCTCTGAAACAGAAGACATCAAAGAAGACATAGCCATCACTGGCTGATTA
TTCACAAAATTTGTAGCTGCAGGAGCCGAATAGGAATCTCTTTCGGTTAAGGAGCCCTGTGGCA
CTGGTGACAACGCTGAAGGTTGTGTACCCATCATGCGGGACAAAGATTTATCAAGTGATGTGAA
AAGTTTTCCAACAAGCTTTGCAGGGGCTAGATTTGTACCATAACCACCCTGAATAACAATGAGT
TGATCATCAGTCAACATGGAAGAAACAGTCTGCTCTAGTAAATACGAGAATCAGCAAGCAACAG
CTACAATAAATTCAAACCTGCTGGTAGGTGCGTATCCGCTCCTCTAGGGATGAAAACAACTGCT
TCCATGCCTCTAATTCAGGTGCACGGCCAGATGCTTTCAGCACCTTCAAGCATGCTTGACAATA
CCTAAAGAGAGTAGTTTAAAGTCAATGTGTGTAACTAAGAAACCAGGGGAAAAACTGGAATAGT
AACTCAGCAAATTACCTTAATGAATCAGAAACCTTCCCAACCTCCACAAGCATGTATGCATATA
TCAGCTTATATGGTTGAAATGGCAAGAGGATGTACTGAGAATTACCAAGAACTTTTGCATATTC
ATACACCTCTGTTCGCTGTTTGTTACATTGTGAGGACATTTGTTTAGAAACAGCAAATGACAAA
AGCAAAAAAAAAACAGTAATAATATGAATTAAGGCCGAGGACAATCATCATCTAATCATGCCAT
TTTCTGAGTAAGAAGTGGTCCAAATAGAGGGACTGTAAAGCTTTTGACTAAAGTAAGTCATGCA
AAAAATAACACTAGAATTTGACACATCTAAAAACATATGTGATACGCATGCTCCTCTGCAAAAA
TGCGAAACCATCTACATTAGATACATAATGATTCATATCTGAGATATTGTTGGAGCTTATAGCA
TAATGCGTGTCCCATAATAATATCCTACCATTCATCTGACTGATGTATGTCCAATGCAACATGT
AGCTAAAGATTATCATCACAGAAAGCACAAACTTCGAATAGATGGCACAGGTATAAAAGACCTG
GATAGCTTCAGGGCTGGTAAATGTACGAGGACATCTCAAATGGTCTGCACCAATTAGACACATT
CTTGAACTTTCTGAATACGACTCGATATTTAGTTCCGCAGCTAAATAGCATGAATGAGCAGCTG
CCACCTGCATAAAAATATGTAAGGTATTTGACAAAACCATGTCAATAAATCATATACTCAACTA
GCCAGATTCAAACCTCATTTTTCTCTTTCCAGAGGCAATCTCCAAGGTGCGTAATTACAAGATC
ATCACCTTTCGTCCTGTTTGCAGTTATAATAGCCAAATTCTCTTGCCAATCATCCAGCATGCTC
TTAGAATTCACAGCCTATCCAACAAAAATGCTAAGTTAGGTTCAACCCTAATGATCCACACACG
ATAAAAGATGAGAACTAAAATGTATGAAAATCATGAAATGGGAAGTCAAGAACAATCAAATGAT
ATACATCACATGACATATAAACACGAAATGAGTATAGAACTATAGGTCATAAACAACATAGAAT
TATTATAGAGTCTAAATAGAAGCATTTGGATCCTATAACAAAAGAAATAGACAACATGTCCCCT
ATTGCTTCGAATCGAATAATCATTCAGGTAGGAGTAATAAATTTAGGGATTCCGTCTAAATGTT
TGATCAATAGATCCTTCTACTGTCATGAGCAATCAAGAATGTGGTAATGAAGTTATGTATTACC
TCCACCGGCCGTTGGGGTATATGCAAATTACCATAATTGCCATCAACAGGGTTCTCAGCATTGA
AAACATCTGCAGGCTGTCCCGCAATAAGAAGGCACAACGTCCTCAAAGGTGATCCAGATACAAA
ATGGTGGTAAGCCATTTTCTTCACAGTATCCACATAAAACTACATCACCAGTCAAGAAAACATT
AAACAAACTGTCCAGGGAAAAAAGAAAAATATGTGTATCATGCAGCCGAAAAATGAATGCAAAC
TTATATCAATAGTAGCAGACCTTATCACCAAGTTGTAAAGCAAGGATTAATGCGGGTCCCCAAA
GCTGACCTTCCTGAGCATACTGAAGAGCCTCTTTCCTTCTACCAGAAACTAGGAGATTTTGAAC
CTCCTTAGCAGTAGCCTGCAATAAAATGGTTGCCACACCCAGGATTACTATTTTTTTCCCCTGA
AGCTGGTGTTCTGAGAGAAATAAGAATTACCTGGATCTGGTTTTCTGACGGAATGTTTTTCATG
CAATGGACAATGGCTCCATACTCTCCCTTATGAGCACCACTACTCTTACAAGATGAGAAAAGTT
TTGTCACTGCCATCTCTGGACCATCTATACCCTGTTACCAAGAATTCAAAATAAATTCAATATT
CCTTTCAAAAGAATAGAAATAAATTCAATAAAAGATAGCCAGCAGTTATATGATAAAGCTGATT
GAAAAATAAAGTGAACTCAAGGAAGAATAGGTCTTTTCATTTCATAGGTCCAGTTTAACATGCA
TACATTACTTCAGCGTTGCTGGTTACATGCTTAAAATCCTGTATGGACAGGCCATTTTTCCATG
TGAGAAATTAATGACAACTTGACAAGGAGATGTTTTTAACTGTGGTCATGAATTATAGAAATAT
AGTACAGCAAGACAAAAAGCAAATACCTCCTGCGATGGATCAGACCCAAAAGGTGAACGGAGCT
TTCCATAGTGTTGGCACAATATTTTAAGCAGTGAAATGAGCAACTTCTGATCATCTCCTCCCTG
GAACTCCCTGATAGAGGAATCATAGCCTCCGGTGATCTCATCAAGCCACTTGTTCACATCCTTT
GCTGCAGCACTTCCACCAACAAGGGGGCCAGGAATAGGTTGACGACACAATGCATGGAAGTAAC
TAAGTGCGCTACCACTAGGGATACTTGGATGATCAACTCTATCAGAAACAATCTCTGACACATT
AAGAATTGACACTGTGCCACATGGATTTCCCTTAAATTGCAGCAATAAAGTTTTTCAGTCACGA
TGACATTGCAAAGAAGAGAATTACAAATAAAAATTCTAATCGTACCTGATTCCCACTATCAAAG
TTTGTGGACATTGAAATGGTCTCTCGCACAACTACAAGCTTCCCCCCAAATCCGAATGTAACCA
AAGCATGTGGTGGGCGTCCAGCTGATGACCT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021