Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d009182_circ_g.2 |
ID in PlantcircBase | zma_circ_009586 |
Alias | Zm08circ00017, GRMZM2G132903_C1 |
Organism | Zea mays |
Position | chr8: 41434139-41434523 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d009182 |
Parent gene annotation |
enoyl-CoA hydratase1 |
Parent gene strand | - |
Alternative splicing | Zm00001d009182_circ_g.1 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d009182_T002:2 Zm00001d009182_T006:2 Zm00001d009182_T003:2 Zm00001d009182_T010:2 Zm00001d009182_T008:2 Zm00001d009182_T007:2 Zm00001d009182_T009:2 Zm00001d009182_T004:2 Zm00001d009182_T001:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.155516339 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
41434394-41434172(+) 41434522-41434141(-) 41434232-41434522(-) |
Potential amino acid sequence |
MPKIEAMSRSEALTAIPSSRTRQASFITGKNTISTMSFSLSFISRGIPFAALSAR*(+) MKLSEKDIVEMVFFPVINEACRVLDEGIAVKASDLDIASIFGMGFPPYRGGVMHWADSIGAKYI HGKLEEWTKRYGGFFKPCSYLAERAAKGIPLLMKLSEKDIVEMVFFPVINEACRVLDEGIAVKA SDLDIASIFGMGFPPYRGGVMHWADSIGAKYIHGKLEEWTKRYGGFFKPCSYLAERAAKGIPLL MKLSEKDIVEMVFFPVINEACRVLDEGIAVKASDLDIASIFGMGFPPYRGGVMHWADSIGAKYI HGKLEEWTKRYGGFFKPCSYLAERAAKGIPLLMKLSEKDIVEMVFFPVINEACRVLDEGIAVKA SDLDIASIFGMGFPPYRGGVMHWADSIGAKYIHGKLEEWTKRYGGFFKPCSYLAERAAKGIPL( -) MESWRSGQSGMGASSSPALTSLKELQKGFLC*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020;Zhang et al., 2019 |