Detail information of Os01g0281100_circ_g.2


General Information
CircRNA Name Os01g0281100_circ_g.2
ID in PlantcircBase osa_circ_001343
Alias NA
Organism Oryza sativa
Position chr1: 10011148-10011392  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os01g0281100
Parent gene annotation Conserved hypothetical protein. (Os01t0281100-01)
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues shoot, root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATATTTTTTTTCTTTCATTTCTCATCCAGCTAACCATGAAAGAACTTACTGTATATGCCCATA
ACAACAACAACAAACCAAGAACTGAAGAACACAAACctgcatgcagaaaccaaaaagaatggcc
tttcttgagaagaacaaacaaccgatcatattaaagaagaagaacagaggagtaagctgaagca
gatcactc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCATGCAGAAACCAAAAAGAATGGCCTTTCTTGAGAAGAACAAACAACCGATCATATTAAAG
AAGAAGAACAGAGGAGTAAGCTGAAGCAGATCACTCAATTGCACACAATTAACTCCCGTCAAGG
ACATCACCGATCCTCTCAATATTTTTTTTCTTTCATTTCTCATCCAGCTAACCATGAAAGAACT
TACTGTATATGCCCATAACAACAACAACAAACCAAGAACTGAAGAACACAAAC
Conservation Information
Conserved circRNAs osi_circ_001983* osi_circ_008940
PMCS 0.509627823
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017