Detail information of Os12g0121400_circ_g.5


General Information
CircRNA Name Os12g0121400_circ_g.5
ID in PlantcircBase osa_circ_010386
Alias NA
Organism Oryza sativa
Position chr12: 1014853-1015031  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os12g0121400
Parent gene annotation Snf7 family protein. (Os12t0121400-00)
Parent gene strand -
Alternative splicing Os12g0121400_circ_g.3 Os12g0121400_circ_g.4
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CT-GT
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGCAGATAGATTTCTTCTGAGGAAACTTAAGTAAAGAAAGCAGCAATGAAAACTAGCAATAATA
AGCAAAAGGAAAAGGGATAAACAACctacacctttttattaacaaaaactaattagagatatct
ccaaattgtgcttcctatcttgttgacagttgcttaacacgatacccctat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTACACCTTTTTATTAACAAAAACTAATTAGAGATATCTCCAAATTGTGCTTCCTATCTTGTTG
ACAGTTGCTTAACACGATACCCCTATAGCAGATAGATTTCTTCTGAGGAAACTTAAGTAAAGAA
AGCAGCAATGAAAACTAGCAATAATAAGCAAAAGGAAAAGGGATAAACAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.162975885
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017