Detail information of AT3G44050_circ_g.4


General Information
CircRNA Name AT3G44050_circ_g.4
ID in PlantcircBase ath_circ_025960
Alias NA
Organism Arabidpsis thaliana
Position chr3: 15819512-15822559  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT3G44050
Parent gene annotation Kinesin-like protein KIN-12E
Parent gene strand +
Alternative splicing AT3G44050_circ_g.1 AT3G44050_circ_g.2 AT3G44050_circ_g.3 AT3G44050_circ_g.5 AT3G44050_circ_g.6 AT3G44050_circ_g.7 AT3G44050_circ_g.8 AT3G44050_circ_g.9
Support reads 3
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT3G44050.1:15
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATCTTTTCTAACTTTCACTTGCTACACAGATTGAAATCACAAGGTGAGGAAGGGGAACGGGAT
ATCTTAAATCAACAGATTCAAGCGTTACAAGCCAAGgagcagatgtttaaagtggctggagtac
ctatggtagagaatgttgtggctggttacaatagctgtatgtttgcatatggccaggtgagttt
tctgactg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGCAGATGTTTAAAGTGGCTGGAGTACCTATGGTAGAGAATGTTGTGGCTGGTTACAATAGCT
GTATGTTTGCATATGGCCAGGTGAGTTTTCTGACTGTGAGTTTTATCTGTATTTGCTTTCTAGT
GTTTCCAGTCTGATGACTGATGGTAGTCTTAATTTGTAGACTGGAAGTGGGAAAACTCATACTA
TGCTTGGAGATATCGAGGGAGGAACACGTAGACATAGTGTCAACTGCGGGATGACACCTAGAGT
TTTTGAGTATTTGTTCTCAAGGATCCAAAAGGTTTGGTGTGTTTGTCTTTCTGTATGCATATGC
TTTAGCTGTGAAATGCTGTGTTCTAACTTATCTGTCTTTTCTTTACCAGGAAAAAGAGGTTCGC
AAAGAGGAAAAGCTACATTTCACATGTAGATGCTCATTTCTGGAGATTTACAACGAGCAAATCC
TTGATTTATTAGATCCATCGTCTTATAATTTACAGGTATACATACCAATTGTATCATGGCAACT
TGTGATCTGAATTTCGTATCTTATGTGGGATTAACCAAATATCCTCTTTTGCAGCTAAGGGAAG
ACCACAAAAAAGGTATTCATGTTGAGAATCTAAAGGAGATTGAAGTTTCAAGTGCCAGAGACGT
GATTCAACAATTGATGCAGGTAATTTATTTTTATTCTCTTAGCTATTTGATATTAGGTGCACTT
TGTCTGTTCTTCTTGGTTTTTCTGACTCTGACCTGCTCCCGTACTACTTTTCCTAAGTATAAAA
GTTTGATCCTATGTAAGATTAAATTTCTCAAAATAACCTGTTATGTCAAATTATTCAGTTTCCA
TGGAGAAGCTTTAATGACACTATTTTCTTGAACTTTCATCTTTTCTTTTGCATCTACTAACTAC
TTTGCATGCTAGATGCTCTTTCCTTCCATAGTCAGAAAGATAATGCAAGAAGTAGTTGACAATT
TGCTCATGTCATTCATTTATTTCATAATAGCTTTCTCATGCAACTTCCACATCTTTTATGTGTA
GGGTGCTGCAAACAGGAAAGTAGCCGCTACTAATATGAATCGTGCAAGTAGTCGATCCCACAGT
GTATTTACATGTATCATCGAAAGCAAGGTAATTAATTGCATTCAACTTGCTACTTGAGTTCTCA
GGCTTTATTTCTGAAATCGTTATGATGATGTATAGCTTATCAATTTCTCAAAGTAAAAGTTATC
CTGATCTGTGTTTTCTATTAGTGGGTATCTCAAGGTGTAACTCATCATCGTTTTGCACGGCTTA
ATCTTGTTGATTTAGCTGGATCTGAAAGGTAATGGCAGCTATAAGTTTCAAACATACTACCCTT
TCTCTGTTCAAGATATTCTGCTAACATCTGGAATATAGGCAAAAGAGTTCAGGAGCTGAAGGTG
AACGCCTCAAAGAAGCTACCAACATCAACAAGTCTCTTTCTACATTGGGGTACGAATACATCTT
GCAGAAGCTTTTCTAGTTTGGTGTTTGTTATATAGTTTTTTAATGATTTGTGGCTACACTGACT
TTGCAGGCTTGTAATCATGAATCTCGTAAGCGTTTCCAATGGAAAATCAGTTCATGTTCCTTAT
CGAGATTCGAAGCTCACATTTCTGCTTCAGGTAAAAAACTTCTTAAATGATGTGAAGCATGGAT
TCCTGTATTGTGGTTCTCGCACCCTAATTGCCCCGATCATTGACCGTCACTCTTATATATCTAC
AGGATTCTCTTGGAGGGAATTCAAAGACAATTATAATTGCGAATATTAGTCCATCTAGCAGGTA
AACTGATACTTGTTTGTTTATCATTCCATGACCTTTCTGCCTGAAACATTCATTGGACTGTATC
TCATGTTTCTGTCTTTTCTATTATTCAGTTGCTCATTGGAGACCCTAAGTACCTTGAAGTTTGC
ACAGCGTGCCAAGCTTATTAAGAACAATGTAATGAAATTATTCCTTGCCATTGTTTACTAAGTC
ATGGATCTGACATAGTTGGAAAGTTTAGTTGTATTAATTATATTAAATCCAACAGGCAATTGTC
AACGAAGATGCGTCTGGAGATGTTATTGCTATGCGGCTTCAAATTCAACAACTCAAGGTAGTGT
TTTAGCAAAGACTGTTGCTTTTTCTCTCATATGAACATGTTATTAAGTGTCTGAAGTCATAATT
TACAGAAAGAAGTAACCCGCTTAAGAGGAATGGGTGGAGTAGACAATCAGGACATGGACACTAT
CTCAATGGGTTGCCCTGCCTCTCCAATGTCTCTCAAGTGGGATGGGTTCAATGGATCATTCACT
CCTCTGACAACTCACAAAAGGATGTCTAAGGTTTGTAATTGGATTTTCCCTGATAGGGAGTTTC
TATCGGCTAAGCTATTTCTTTTTCTTAGGAATCTGATCCTCATTGTTCAGCATTTGGTTTGTTT
TTAAACATTTTCACTTGTATGGCTTTTGTAGGTAAAAGACTACGAAGTTGCACTTGTGGGTGCT
TTCAGGAGAGAGAGGGAAAAGGACGTTGCTTTACAGGCTTTGACTGCTGAAAATGAGGCCTCAA
TGAAGTTGGTACGTTAGAAATAGATTCCTCACTTTTGAGATTCACATACTGTCGAAAATCTTTC
ATCATGAGTTGATCAACTTTTTTTTTTGTCTCCAAACAGGAAAAGAAAAGAGAGGATGAAATAC
GAGGGCTGAAAATGATGTTAAAGCTCCGAGATTCAGCAATCAAGAGTTTACAAGGTGTAACTTC
AGGAAAGATCCCTGTTGAAGCTCATCTGCAAAAAGAAAAGGGTGACCTTATGAAGGAGATAGAG
GTGCTACGTGCTCAAGTTGACAGAAATCAGGAAGTTACCAAATTTGCCACGGAGAATTTGCGAT
TGAAAGAAGAGATCCGCAGGCAAGAAGACTCTCTGAAGATTTCCTATTTGTGGACCCTCAGCTA
TATACATCTTTTCTAACTTTCACTTGCTACACAGATTGAAATCACAAGGTGAGGAAGGGGAACG
GGATATCTTAAATCAACAGATTCAAGCGTTACAAGCCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.142197452
Functional Information
Coding potential Y
Potential coding position 15819518-15822556(+)
Potential amino acid sequence MFKVAGVPMVENVVAGYNSCMFAYGQTGSGKTHTMLGDIEGGTRRHSVNCGMTPRVFEYLFSRI
QKEKEVRKEEKLHFTCRCSFLEIYNEQILDLLDPSSYNLQLREDHKKGIHVENLKEIEVSSARD
VIQQLMQGAANRKVAATNMNRASSRSHSVFTCIIESKWVSQGVTHHRFARLNLVDLAGSERQKS
SGAEGERLKEATNINKSLSTLGLVIMNLVSVSNGKSVHVPYRDSKLTFLLQDSLGGNSKTIIIA
NISPSSSCSLETLSTLKFAQRAKLIKNNAIVNEDASGDVIAMRLQIQQLKKEVTRLRGMGGVDN
QDMDTISMGCPASPMSLKWDGFNGSFTPLTTHKRMSKVKDYEVALVGAFRREREKDVALQALTA
ENEASMKLEKKREDEIRGLKMMLKLRDSAIKSLQGVTSGKIPVEAHLQKEKGDLMKEIEVLRAQ
VDRNQEVTKFATENLRLKEEIRRLKSQGEEGERDILNQQIQALQAKEQMFKVAGVPMVENVVAG
YNSCMFAYGQTGSGKTHTMLGDIEGGTRRHSVNCGMTPRVFEYLFSRIQKEKEVRKEEKLHFTC
RCSFLEIYNEQILDLLDPSSYNLQLREDHKKGIHVENLKEIEVSSARDVIQQLMQGAANRKVAA
TNMNRASSRSHSVFTCIIESKWVSQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNINK
SLSTLGLVIMNLVSVSNGKSVHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSSSCSLETLSTL
KFAQRAKLIKNNAIVNEDASGDVIAMRLQIQQLKKEVTRLRGMGGVDNQDMDTISMGCPASPMS
LKWDGFNGSFTPLTTHKRMSKVKDYEVALVGAFRREREKDVALQALTAENEASMKLEKKREDEI
RGLKMMLKLRDSAIKSLQGVTSGKIPVEAHLQKEKGDLMKEIEVLRAQVDRNQEVTKFATENLR
LKEEIRRLKSQGEEGERDILNQQIQALQAKEQMFKVAGVPMVENVVAGYNSCMFAYGQTGSGKT
HTMLGDIEGGTRRHSVNCGMTPRVFEYLFSRIQKEKEVRKEEKLHFTCRCSFLEIYNEQILDLL
DPSSYNLQLREDHKKGIHVENLKEIEVSSARDVIQQLMQGAANRKVAATNMNRASSRSHSVFTC
IIESKWVSQGVTHHRFARLNLVDLAGSERQKSSGAEGERLKEATNINKSLSTLGLVIMNLVSVS
NGKSVHVPYRDSKLTFLLQDSLGGNSKTIIIANISPSSSCSLETLSTLKFAQRAKLIKNNAIVN
EDASGDVIAMRLQIQQLKKEVTRLRGMGGVDNQDMDTISMGCPASPMSLKWDGFNGSFTPLTTH
KRMSKVKDYEVALVGAFRREREKDVALQALTAENEASMKLEKKREDEIRGLKMMLKLRDSAIKS
LQGVTSGKIPVEAHLQKEKGDLMKEIEVLRAQVDRNQEVTKFATENLRLKEEIRRLKSQGEEGE
RDILNQQIQALQAKEQMFKVAGVPMVENVVAGYNSCMFAYGQTGSGKTHTMLGDIEGGTRRHSV
NCGMTPRVFEYLFSRIQKEKEVRKEEKLHFTCRCSFLEIYNEQILDLLDPSSYNLQLREDHKKG
IHVENLKEIEVSSARDVIQQLMQGAANRKVAATNMNRASSRSHSVFTCIIESKWVSQGVTHHRF
ARLNLVDLAGSERQKSSGAEGERLKEATNINKSLSTLGLVIMNLVSVSNGKSVHVPYRDSKLTF
LLQDSLGGNSKTIIIANISPSSSCSLETLSTLKFAQRAKLIKNNAIVNEDASGDVIAMRLQIQQ
LKKEVTRLRGMGGVDNQDMDTISMGCPASPMSLKWDGFNGSFTPLTTHKRMSKVKDYEVALVGA
FRREREKDVALQALTAENEASMKLEKKREDEIRGLKMMLKLRDSAIKSLQGVTSGKIPVEAHLQ
KEKGDLMKEIEVLRAQVDRNQEVTKFATENLRLKEEIRRLKSQGEEGERDILNQQIQALQAK(+
)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017