Detail information of BGIOSGA021672_circ_igg.1


General Information
CircRNA Name BGIOSGA021672_circ_igg.1
ID in PlantcircBase osi_circ_016798
Alias Chr06:5654440_5664512(MH63RS2), Chr06:5654440_5664512(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr6: 6786503-6790988  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRCexplorer2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTCCTCAGCCGTCGGGGTTTCGAGTAGACGATGCCTGAATCGTCCGGTGTGATCTGCCTGTCTG
TGCTTGAGATGGGCGCCTGCCCGTCAGGTTGGTATTatacaaccaacccgtctcatgtaggctt
ccaagcgaaatcaaactcttccttagtcccagcacgtgtctcacatctgaaagtagcacctcgt
ttccatca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATACAACCAACCCGTCTCATGTAGGCTTCCAAGCGAAATCAAACTCTTCCTTAGTCCCAGCACG
TGTCTCACATCTGAAAGTAGCACCTCGTTTCCATCATACATCTTGAATTTGACATCGCCCACTC
CAACAACACGATAACTCGTGTCATCGCCTAAGTAAACAGCACCAAAATCACCAGATTTGTATGA
AGAGAACCACTCCCGCTTCGATGTCACATGATAGGAACTAGCTGAGTCCAACATCCACGCTTCT
CCAGACTTCTCGTTAGACACTGTGAGAATCTCATGACTGCTGCTCTCTGAATCATCACTATGGG
CTGCTAAACTTGCATTCGCACTTATCCTCTTCTTCAGTAATGGGCAATTCCTCCTTATATGTCC
AAACTCATGACACTTATATCAAACATGATCATGCTCCTTGCTCTTCGACACCCCCGCTTCATGA
TCATGCTTTGCCTTGACCAGCAAACTCTCAGCCTGAGAAGCCTCCATTGCCTCAAGTCTCGTGC
AAGCAACGACGAAATTATCTCCTCAGTTTTGACAGTATCCTTGCCGTACGTCAGGGTAGTCACC
ACATGTTCATAAGACGGTGGAAGCGAGCACAGAAGAATTATGGCCTTGTCTTCATCATCCAGTT
TCACATCTAACTTACTTAGATCCACAATCAACTGATTGAAGACGTCCACGTGCATCCTAAGATC
TGACTCCTCTTGCATCTGCAAACCATACAGTTGTTGTTTGAGATACAACTTACTCGTCAGCGAC
TTGGACATATACAGGTTTGCCAACTTGTCCCAAATTTCCTTCGGTGATTTTTTGTCCATGACCT
GGTACATGACAGAATCCGAGAGACTCAAGCGTATTGTTGCAGCTGCCTGCGCCTTCATCTCCTC
TCACTTGCTAGCATCCATCTTTTCTGGCATCGTCTCCTCAAGAGCCTTGGATATCCCCTGTTGA
GCCAACAGATTCTTCAGCCTCATCTGCCAGAGAACGAAATTCCCGGTGCCATCGAACTTCACCA
CCTCAAATTTGGAAACCACCGTCGCTGCCATCGACGATAATCAACTCAACAGATGTTGCCCTAT
TAAATTGATCTGCCCTGATTAATTGACCCCACCGACTAACTCGAACAGTACCAGCCGGACCGAA
CCGTTTTTTTTTCTCTCTCCAAAAAACTGGAACAGGTGTCCTTTACTCGGTCAAAGAATCAGTT
GATGCGGTCAAAGGGTTACAGATCCAAATCGAATCCCGTTTCTTGCTCCTTCTGCCCGACTCCT
CTCGGCCCGATTGGCGCCGCCGCCCAGCGCCTGCCGTGCCTCTCTCCCCACTGACCAGCCGAGC
ACCAGAGCCGCCGCACCCCACCACCAAACCACGCCGCCGTCGAAAATCGCCTAGGTTCCCGCCG
CCGACGCCCGTCCTCGAGTGCATGCCTGCAGGTCCTGCTGTCGACGCCTCTGAAGACCCCCGGT
GATGGACGACGCTGCCCCGACGCAGGAGAGGACGCCTCCTCTGCCGTCGGTGTCCGCCGCCTCC
TCCAAGAGCCGGCACCGCCGAGCTTCCGCCGCCTGCACCTGCTGCTCGCCGAAGCCGTGCAGCG
CCGCCGGAGCCCGACACCGCAGACCACCTCCGCCCACGAAATCCAACAGGTCAGATCTCGCCTT
GCTTTGGTAGTTTGCCCGATTGCTTGTTGTTGCAATCCCGTGGTCCTCTGCTGCTTTTATTTGG
AGAAATTCGAGTCCGATTCTTAACCAAATCGAAGAAACTCTTTGTTCCCCTTCCGTGTACGAGT
TGGTCACCGGTTTGGCTTTTTCCATGCGTAGCCAGGAAGGACTCGTAATCCGAGTCTATCCGCT
GTGCCTGCAAAAACCCAAGTCGGTCTCCTGCGTAAATCCGGCCCAAAACAGAACCATCTTGCTA
CCTCTGGACTCCGGTCACATGTAGTCTACGGCTTCGACATGCAAACGTGCACACCGCCACCTCT
GATGACCTCCTCAGCCACCACGCACCCGTACGACCTCTAGCGCAGCCAACCGACATCCCGCCCA
ACCTCGCCAGCGAGCAATATCGCCGGTCAGTTGCAACCAATGCCTTTGCTGTACTAACACGATT
GAATAAAGCATTGACGATCTGAATTGACCACCCCTCTGCCTGATTCCATCGCTTGTCGTATGTA
CGCCTTCTCTATAGCATGTCCATCACGCAATTACCTCATCAACACCTTCAAAAGCTGCCTCTAG
GAACCACCCGCTCCGACTTCCGATTAAACACCATCAATCTAGTCGCGAGCCGAAGCCGACAAGT
TGCATGCCGTCTTCTCAGCCGCGAACGACCCGAGTGCTACGTCTAGCCGTCTCCCTGTCGAACG
CAACTCATCGAAAGGCCCAGGCCACCCCGCCCAGAGTGATCGATCCACCGACCGAGAACGCCGA
TCGCCTCCAGCTTCAATCAACCCGAGCGTGCGGCCGCACGTCTCCCTATTGAGAGTAGCTCACC
GGAAAGTCCGAGCCACCCGCTCGAAGTGTCCGACCCACCGATTGGATCACCAATCGCTTCTGCC
GCCATCAACCAGAGCACCACGTCTAGTCATCTCCCTGTTGAAAGCAGCCATCGAACGGTTCAGA
CCGCCGCCTGAAGTGTTCGATCCACCGATCAAATTTCGTTGATCGCCGCTGTGCTCCACCTTGC
GCACATGTCCCTCCCTGGACATAAACCGCGAGCGGCGCGGTGTGAAGCACCTCCATCGCGCCTC
TACCATGGACCTCCCGCAAGCTCTGATACCACTTGTTATAAAACCAGCCCCGAAATCGACATCG
GTAGCTAAACGCGGAAGAAAACGCCATAGGAGATCCAAAATGATAGCGACACCGAGACACGATA
TTTGGTACATCCTTTTTTTTGCGGCATGCTCTCTGATTTACGGATTCGCAGGGGGCCGAGGGCC
AACCTTAGTTGACTGACAATGACAAAGGCTTGCGAAACAAAGTAACGCCTTTGAAATGGAATCT
TAATTAAGTAGTCTATCAGTGGTGCGAAGCAGCTTTGCCCCGGGGAGCGAAAGGTTATACCTTG
CCGTAGCCTACATCTCCGGGGCACTGATTACGGACGCTCCTCCCCGATCCAGCATATACAACGT
ATCAGAGTTACAACGACTCACAGCTGGTCGCCACCGGCAGCTGCTCCCTCACGCTATGCTAAGT
CGCCATGCGGTTACAACAGGCACGCCCCTCTATTTATGAGAGATCCTAGGATAGAGTCCGACTC
ATACTCTAGTCCTAATACCTATTACAACTCCAAGTCCTAAACTGTAACCGACTACATACACATA
TTCGACACAAACTCTAACAGTGTCAAATCATGAGTAAATTTTGACACTTCTAATGGTTTAGTAG
AGTTGGGTTATAGGAGTTGCATTACATTTGGTAAATTTGGCATTAATCTAAATATTTATAAGGT
ATTATTTAAAGTGCCAATTATTTGGTTGGGTAAGTTTTGGCATCAAACCACAACAGGCTTGACA
ACAGCCCATCATGCCCATGGTTACATACCTACGTAAACAAAATTCACCTCGAGGTGCAAAAAAT
TGATATACGCAAACATAAAAAAAAAAGGGGGGATGGATGGAAGTGAGGGTCACTTATGAGTGTA
TCACAAATATAGTGCACATTACTAAACCGAACATTTCAATTTGACAATTTAATTGAGGATTAAG
CATAAGTAGCAGCGCCCTCGTCTTTCTCATCAAGGAAAGGATAGTCCGTGTAGCCAACAACAGG
ATCCTGTATGTAAAAGGTGGACCTATTATACTTGTTCAATGGTGCGTTGATCGCGAACCTCTTG
GGCAAGTCCGGATTGGCCAAGAAGTGCCTCCCGTAGGCGACGAGGTCAGCATATCCATCGGCTA
TCACCTTGTTTCCTTCCTCCCGATCATATCCTCCGGCAGCGATGAAAGTGCCATTGAACAGCTT
CCGGAATGGCAGGAGGCCATGGGTGATCTTCCTGCGTCCTTCCACGATGGCCATTCTTGGCTCC
ACCATGTGGCAGTAGAGAAACCCCGGGTGCTTGTTGAGCTGCTGCACCATGTACGAGCCGAGAG
CCACCGGGTCGGAGTCGACGCAGTCCATGTAGTCGATGAACGGTGACAGCCTGATCCCCACACG
GTGCGCTCCAACCTCGGCGACGATGGCGTCGATCACCTCGACAACGAAGCGGCACCGGTTCTCG
AGGCTGCCACCGTACTCGTCGCTGCGGTCGTTGGCGCTGTCCTTCATGAACTGCTCCAGGAGGT
AGCCGTGCGCGCCGTGGATCTCCACGCCGTCGAACCCGGCCTCGATGGCGTTCCGCGCGGCTCG
CCTGAAGTCGTCGATGATCTGAGGGATCTCCTCCGTCCTCAGCCGTCGGGGTTTCGAGTAGACG
ATGCCTGAATCGTCCGGTGTGATCTGCCTGTCTGTGCTTGAGATGGGCGCCTGCCCGTCAGGTT
GGTATT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021