Detail information of Os02g0714200_circ_g.7


General Information
CircRNA Name Os02g0714200_circ_g.7
ID in PlantcircBase osa_circ_016252
Alias NA
Organism Oryza sativa
Position chr2: 29608700-29609204  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os02g0714200
Parent gene annotation Similar to Pyrophosphate--fructose 6-phosphate 1-phosphotransfer
ase alpha subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase, py
rophosphate dependent) (Pyrophosphate-dependent 6-phosphofructos
e-1-kinase) (PPi-PFK). (Os02t0714200-01)
Parent gene strand -
Alternative splicing Os02g0714200_circ_g.1 Os02g0714200_circ_g.2 Os02g0714200_circ_g.3 Os02g0714200_circ_g.4 Os02g0714200_circ_g.5 Os02g0714200_circ_g.6
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os02t0714200-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTGCCCGTATGTGTGGGGGAACGCGTGGCTGATCACATGAGCGCCTGCAGGATCAGCAGCAAT
TGCAGCGTCACCATACTCCACTCTCACAGTGGTGCCcaagaaaaccaataagtttgctgtttgg
gttgtgagccttaattgcctcatggagtccccagatgacattatggcctcccggggactgcctt
ccgcagaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 286
Transcript exons: 29608700-29608812,29609032-29609204
CAAGAAAACCAATAAGTTTGCTGTTTGGGTTGTGAGCCTTAATTGCCTCATGGAGTCCCCAGAT
GACATTATGGCCTCCCGGGGACTGCCTTCCGCAGAAAACAACACCAACCCTGACAACAGGATGC
TCTGATATGACAGTAGCATCGGGGACATTAGCCGTCTTCCGGAGAAAATGGGCCAGGGGCTGCC
CGTATGTGTGGGGGAACGCGTGGCTGATCACATGAGCGCCTGCAGGATCAGCAGCAATTGCAGC
GTCACCATACTCCACTCTCACAGTGGTGCC

Genomic sequence CAAGAAAACCAATAAGTTTGCTGTTTGGGTTGTGAGCCTTAATTGCCTCATGGAGTCCCCAGAT
GACATTATGGCCTCCCGGGGACTGCCTTCCGCAGAAAACAACACCAACCCTGCATCCAAAACAA
AACAATCAGATGTCTTATATGTGCAGGCAGTGAGAGGCGAAGACAAATAATTTGATGTAATTTC
TCTCCAGCATTCTCTTATAATTTGACAAATACTTTACTACTAGTATTTGGTTTCTTTTTTTCAA
AACAGTTTCTTGTCTTGCAGCAGATGGCATATCAAGTAAAAAAATTGAATATCACAAGTAAAAA
ATACATATATACCTGACAACAGGATGCTCTGATATGACAGTAGCATCGGGGACATTAGCCGTCT
TCCGGAGAAAATGGGCCAGGGGCTGCCCGTATGTGTGGGGGAACGCGTGGCTGATCACATGAGC
GCCTGCAGGATCAGCAGCAATTGCAGCGTCACCATACTCCACTCTCACAGTGGTGCC
Conservation Information
Conserved circRNAs osi_circ_012202
PMCS 0.393310198
Functional Information
Coding potential Y
Potential coding position 29609095-29608711(+)
29609076-29609178(-)
Potential amino acid sequence MGQGLPVCVGERVADHMSACRISSNCSVTILHSHSGAQENQ*(+)
MSPMLLSYQSILLSGLVLFSAEGSPREAIMSSGDSMRQLRLTTQTANLLVFLGTTVRVEYGDAA
IAADPAGAHVISHAFPHTYGQPLAHFLRKTANVPDATVISEHPVVRVGVVFCGRQSPGGHNVIW
GLHEAIKAHNPNSKLIGFLGHHCESGVW*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017