Detail information of Zm00001d012918_circ_g.1


General Information
CircRNA Name Zm00001d012918_circ_g.1
ID in PlantcircBase zma_circ_001860
Alias circ855
Organism Zea mays
Position chr5: 1945155-1945553  JBrowse»
Reference genome AGPv4.38
Type   ei-circRNA
Identification method CIRI
Parent gene Zm00001d012918
Parent gene annotation Flap endonuclease 1
Parent gene strand +
Alternative splicing NA
Support reads 4
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d012918_T002:3
Zm00001d012918_T003:3
Zm00001d012918_T001:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTATGGTTTTCTAGGTTTTGGAAGAACTTGGACTCACGATGGATCAGTTCATTGACTTGTGTA
TCCTTAGTGGATGTGATTACTGTGAGAATATTAGAGggcaccaggtgaggctgaagcacagtgt
gcagcactttgtgaaaatcaccaggtataccgagttaatagctctgtggaatcctgtaccttaa
ttttactt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGCACCAGGTGAGGCTGAAGCACAGTGTGCAGCACTTTGTGAAAATCACCAGGTATACCGAGTT
AATAGCTCTGTGGAATCCTGTACCTTAATTTTACTTTATTTTCATTCTGAGTTGTGAATGCTAG
GTTTATGCTGTAGCTTCAGAGGACATGGACACACTGACTTTTGGTGCCCGAAGGTTTCTTCGTC
ACTTAACTGACCTTGGTTATAAGAAATCTCCTGTGACAGAATTTGATGTGTCAAAGGTATCTTC
ACATATTTTGTCTTTTTTATTCTTTAGTGTTCTAGTGATTTTTGTTATGGTTTTCTAGGTTTTG
GAAGAACTTGGACTCACGATGGATCAGTTCATTGACTTGTGTATCCTTAGTGGATGTGATTACT
GTGAGAATATTAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.231030201
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b