Plant Circular RNA Database

Detail information of Os09g0459800_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os09g0459800_circ_g.1
					
						ID in PlantcircBase
						osa_circ_039468
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr9: 17379963-17382160  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os09g0459800						
					
						Parent gene annotation
						
							Similar to ARP protein. (Os09t0459800-01);Similar to ARP protein
. (Os09t0459800-02);Similar to NADPH oxidoreductase homolog (Fra
gment). (Os09t0459800-03);Similar to predicted protein. (Os09t04
59800-04)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os09g0459800_circ_g.2 Os09g0459800_circ_g.3 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os09t0459850-00:4
Os09t0459850-00:4
Os09t0459800-01:4
Os09t0459800-03:2
Os09t0459800-02:4
Os09t0459800-04:1

General Information
CircRNA Name	Os09g0459800_circ_g.1
ID in PlantcircBase	osa_circ_039468
Alias	NA
Organism	Oryza sativa
Position	chr9: 17379963-17382160 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer
Parent gene	Os09g0459800
Parent gene annotation	Similar to ARP protein. (Os09t0459800-01);Similar to ARP protein . (Os09t0459800-02);Similar to NADPH oxidoreductase homolog (Fra gment). (Os09t0459800-03);Similar to predicted protein. (Os09t04 59800-04)
Parent gene strand	+
Alternative splicing	Os09g0459800_circ_g.2 Os09g0459800_circ_g.3
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os09t0459850-00:4 Os09t0459850-00:4 Os09t0459800-01:4 Os09t0459800-03:2 Os09t0459800-02:4 Os09t0459800-04:1

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AGGAACAAAGAAAGTATATGCTCAATCTTCCCAAGTCAAAAAGGATGTTAACACAAAATACCTT
TTCGACTGTCCAAACTCCTGAGTTCTATGAGAAGATagtcaaattatgcgatctgggaagaagc
ctggtgtcataataaatattggttcagccgcaggcctttatcctatgaactttgatcccatata
tagtggaa

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							AGTCAAATTATGCGATCTGGGAAGAAGCCTGGTGTCATAATAAATATTGGTTCAGCCGCAGGCC
TTTATCCTATGAACTTTGATCCCATATATAGTGGAACAAAAGGTGCATATACAATCACATATAT
AATTCTTATTTTTTGGGCAGAAGATTGCTGTTGCAATGAAAGTCCAACTTGGATTATAATTTGA
TCATTTATTTGTGAAAAATAATATGCATGCTAACTGTTTATCTAGATGGTTCAAGATTCTTTGC
AATTACAACTTGTACATGATCCACATGTTGATAAAGATATATGGCCAACTGTATTTTCCAATAT
TAACTCCACATTCATTTTATATTATCAAATATGTTTTTCACGCTATGCCACTGTGATCGCAAAT
ATTGTATTTCAGCTGGCGTTGTTATGTTTACAAGATCACTTGCTCCATTGAAACGCCATGGTAT
ACGTGTCAATGTACTCTGCCCTGAGGTATGAATATATTACATAACTAGAGGCAAATATGAAATA
TTTATTTATTTTTGTCATTTCTGACTCATAGTATTCCAGCATATGTATTCTGTCCAAAACTTGT
GAATTTGCTGATATGTTTGGTAGTATATCAGAATATTAACTTGATGATGGTACAACAGACAGCA
CACCCAGCTGTGCTCTCTGTTACATAAGTTCTTATTACATAGAAATATTACTAGAATGATCACA
TAAAGCTTTCCATAGGGCCAACTCTACTATTTCTTAGAAAAAGAAAGACGAAAAGTGATTGGTC
ACTACTTGGATTCTCAAGGACCAGGAGCAGATATCCTTATGACCATCCGTGCACCCATTAAAAT
TGCAAGCCTTATATAACTCTCATTTTTAGTTGTGGTAGAGTTGTATGAACATGTAGTATTGTAG
TTGAGCTCACAGGTAAAATTAACTAAGTGGGCAAAAGTTGATGATAATTGCATATGAGAAAAAC
CGTGGATATCTGGAAAGAGTTGATATCTGCAACTTGATAATTTCCAGATTGCAGAATCTCCAAG
TCATAAATTCACATGGCTTCAAATTTATCCTAAACAAACTGTTCTATGATTCTATCATTGTCTC
ATTATCAAACGCTGGATGCTGTGAAGGCAATGATGCTCCATGATCATTATCAAACATGATCTAT
TTTATGGTTTGTTATGTGCAGTTTGTTCAAACTAATATGGCAGAGCAACTAAGTCGTCGAATAA
TAGATGTAACTGGTGGATATATAAAGATGGAAGACATTGTTAATGGTATGTTTCTCTTACCTTT
TTGAGCAGTAGGTACGTCTGTATGTGTGTTCTCCACTTTTAACCTTGTGACCATAATTTGTGTG
TCACAGTTTATACAGGCATGTTCAACATTCTGATGAATAATTCTATTGCTTTTGTTGAGATGGA
ATGCTTTACTTGTTGAATCAAATGTAGACATCTGCGCACATTTAGCTATGTAAAAGATATGTGA
TTCCATTATTTTGATTTGAGCAAAGACATAAAGTTTGAGGTCTATAAACTTCCATGAGTATTTA
ACTTTAGTCTCGGAGCTTGAGAGCTATTCAACTAGGTCCTTCAACTTATAAAATCAAGTGATAT
CATCACTACTTTGTTCGCATACCCATTGATAACCATATGAGCAACTGAATGTATAAATTTCCGC
AATGAAAGGAGATCACAAATATGCGATAGACTTTACTGGCATGCAAATATCTAAAACCTGATAT
CCTGGTCTGTAAAATGGACATAGCTTTTCTTGGGATGGATCCATGTGCCTATGCCAAATGTCCC
TGTCAGGTTGGTATTGTGTTTGACGGGACTCGACTAGTTGACCTCCTTATACCACTGAATGTGT
TTAGGGACCTAAGTTCTCAATCCTAGGGGGTCAGGTAATACACCTATGCAATTTTAGTTATCTA
CTGTGGTATTTTAACCCCTATTGATGCATACCTCTTGTTTACCCTCTCTTTTGGTTTGCTGAAA
AGAACCCATTTTTATTTGGATTAGGTACATTTGAACTTATAAAAGATGAAAGCAAGGCTGGTGC
TTGCCTTTGGATAACTAAACGAAGAGGGATGGAGTACTGGCCAACACCAGAGGAACAAAGAAAG
TATATGCTCAATCTTCCCAAGTCAAAAAGGATGTTAACACAAAATACCTTTTCGACTGTCCAAA
CTCCTGAGTTCTATGAGAAGAT
						
					

			
		

Sequences
Splice junction sequence	AGGAACAAAGAAAGTATATGCTCAATCTTCCCAAGTCAAAAAGGATGTTAACACAAAATACCTT TTCGACTGTCCAAACTCCTGAGTTCTATGAGAAGATagtcaaattatgcgatctgggaagaagc ctggtgtcataataaatattggttcagccgcaggcctttatcctatgaactttgatcccatata tagtggaa
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	AGTCAAATTATGCGATCTGGGAAGAAGCCTGGTGTCATAATAAATATTGGTTCAGCCGCAGGCC TTTATCCTATGAACTTTGATCCCATATATAGTGGAACAAAAGGTGCATATACAATCACATATAT AATTCTTATTTTTTGGGCAGAAGATTGCTGTTGCAATGAAAGTCCAACTTGGATTATAATTTGA TCATTTATTTGTGAAAAATAATATGCATGCTAACTGTTTATCTAGATGGTTCAAGATTCTTTGC AATTACAACTTGTACATGATCCACATGTTGATAAAGATATATGGCCAACTGTATTTTCCAATAT TAACTCCACATTCATTTTATATTATCAAATATGTTTTTCACGCTATGCCACTGTGATCGCAAAT ATTGTATTTCAGCTGGCGTTGTTATGTTTACAAGATCACTTGCTCCATTGAAACGCCATGGTAT ACGTGTCAATGTACTCTGCCCTGAGGTATGAATATATTACATAACTAGAGGCAAATATGAAATA TTTATTTATTTTTGTCATTTCTGACTCATAGTATTCCAGCATATGTATTCTGTCCAAAACTTGT GAATTTGCTGATATGTTTGGTAGTATATCAGAATATTAACTTGATGATGGTACAACAGACAGCA CACCCAGCTGTGCTCTCTGTTACATAAGTTCTTATTACATAGAAATATTACTAGAATGATCACA TAAAGCTTTCCATAGGGCCAACTCTACTATTTCTTAGAAAAAGAAAGACGAAAAGTGATTGGTC ACTACTTGGATTCTCAAGGACCAGGAGCAGATATCCTTATGACCATCCGTGCACCCATTAAAAT TGCAAGCCTTATATAACTCTCATTTTTAGTTGTGGTAGAGTTGTATGAACATGTAGTATTGTAG TTGAGCTCACAGGTAAAATTAACTAAGTGGGCAAAAGTTGATGATAATTGCATATGAGAAAAAC CGTGGATATCTGGAAAGAGTTGATATCTGCAACTTGATAATTTCCAGATTGCAGAATCTCCAAG TCATAAATTCACATGGCTTCAAATTTATCCTAAACAAACTGTTCTATGATTCTATCATTGTCTC ATTATCAAACGCTGGATGCTGTGAAGGCAATGATGCTCCATGATCATTATCAAACATGATCTAT TTTATGGTTTGTTATGTGCAGTTTGTTCAAACTAATATGGCAGAGCAACTAAGTCGTCGAATAA TAGATGTAACTGGTGGATATATAAAGATGGAAGACATTGTTAATGGTATGTTTCTCTTACCTTT TTGAGCAGTAGGTACGTCTGTATGTGTGTTCTCCACTTTTAACCTTGTGACCATAATTTGTGTG TCACAGTTTATACAGGCATGTTCAACATTCTGATGAATAATTCTATTGCTTTTGTTGAGATGGA ATGCTTTACTTGTTGAATCAAATGTAGACATCTGCGCACATTTAGCTATGTAAAAGATATGTGA TTCCATTATTTTGATTTGAGCAAAGACATAAAGTTTGAGGTCTATAAACTTCCATGAGTATTTA ACTTTAGTCTCGGAGCTTGAGAGCTATTCAACTAGGTCCTTCAACTTATAAAATCAAGTGATAT CATCACTACTTTGTTCGCATACCCATTGATAACCATATGAGCAACTGAATGTATAAATTTCCGC AATGAAAGGAGATCACAAATATGCGATAGACTTTACTGGCATGCAAATATCTAAAACCTGATAT CCTGGTCTGTAAAATGGACATAGCTTTTCTTGGGATGGATCCATGTGCCTATGCCAAATGTCCC TGTCAGGTTGGTATTGTGTTTGACGGGACTCGACTAGTTGACCTCCTTATACCACTGAATGTGT TTAGGGACCTAAGTTCTCAATCCTAGGGGGTCAGGTAATACACCTATGCAATTTTAGTTATCTA CTGTGGTATTTTAACCCCTATTGATGCATACCTCTTGTTTACCCTCTCTTTTGGTTTGCTGAAA AGAACCCATTTTTATTTGGATTAGGTACATTTGAACTTATAAAAGATGAAAGCAAGGCTGGTGC TTGCCTTTGGATAACTAAACGAAGAGGGATGGAGTACTGGCCAACACCAGAGGAACAAAGAAAG TATATGCTCAATCTTCCCAAGTCAAAAAGGATGTTAACACAAAATACCTTTTCGACTGTCCAAA CTCCTGAGTTCTATGAGAAGAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.111100258

Conservation Information
Conserved circRNAs	NA
PMCS	0.111100258

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							17379973-17379999(+)
						
						Potential amino acid sequence
						
							MRSGKKPGVIINIGSAAGLYPMNFDPIYSGTKAGVVMFTRSLAPLKRHGIRVNVLCPEFVQTNM
AEQLSRRIIDVTGGYIKMEDIVNGTFELIKDESKAGACLWITKRRGMEYWPTPEEQRKYMLNLP
KSKRMLTQNTFSTVQTPEFYEKIVKLCDLGRSLVS*(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	17379973-17379999(+)
Potential amino acid sequence	MRSGKKPGVIINIGSAAGLYPMNFDPIYSGTKAGVVMFTRSLAPLKRHGIRVNVLCPEFVQTNM AEQLSRRIIDVTGGYIKMEDIVNGTFELIKDESKAGACLWITKRRGMEYWPTPEEQRKYMLNLP KSKRMLTQNTFSTVQTPEFYEKIVKLCDLGRSLVS*(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os09g0459800_circ_g.1

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