Detail information of AT5G01400_circ_g.6


General Information
CircRNA Name AT5G01400_circ_g.6
ID in PlantcircBase ath_circ_035861
Alias 5:167391-169206
Organism Arabidpsis thaliana
Position chr5: 167391-169206  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT5G01400
Parent gene annotation HEAT repeat-containing protein
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues seedling
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT5G01400.3:4
AT5G01400.2:4
AT5G01400.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGCATACACTCCTTTGAGAAAGCTTAGGGGATCCAAGCTCAGTAGAACAGGTAGAATTCGTCCA
CAGTATGCAGGACGTTTCTTTGCAACTGATGAAAGActcaactcctaaatgagcaagaagagaa
aagcggagttgtgagccaccagacattgatatttgcttatatgcttcaacaatgcgcaaaaaaa
ccagcttt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1393
Transcript exons: 167391-167936,168051-168605,168711-168830,169035-169206
CTCAACTCCTAAATGAGCAAGAAGAGAAAAGCGGAGTTGTGAGCCACCAGACATTGATATTTGC
TTATATGCTTCAACAATGCGCAAAAAAACCAGCTTTTGTAAACTGTCTTTCTCTTCATCAGAAA
GGTCGACAACAGGTGCTGATATCTTAGGTAAGACAAACTGACTCGCCGAAGCAACTGTGCCAAC
CGCCTTTGGACTAAATTCCTCCAACTTATCCACAGACATTGAGGGAATTACATCGACAAGAAGT
TTTCCACTGAAACTCGCATTTTGATTTTTGCTTGCAGCCTCCACATTCGTAGAACTCAATACAT
TAGTAACAAGGGCTCCTGACCCATCATGTTGAGCAGAAGATTCCAGTCCAGGTATTCCACTTTC
TCTATTCCCTATGTAATGCACATTTTGTGGAGACACAGTATTGCTTTCTTCATTTTCTGGAAAA
GAAGTATCACAGGTAGCTAATAAGCCAGGTGGAGTTCTTGCATCTTCAGCTGGAAACATTTGCT
GGTCCACATGAACAGAATAGACTTCCTCATCTTCATTGTGAGGATTTATCAGGGCAGCAATTGG
TGGGAATGCGGTTGACAATGAAAGGACACCCGCTACAAATGATGGTGGATATTTAATTTGTGCA
TCACTGCCAACTATACACATGTTCATCACCAACTCATCGGTGCCATCAGCATAAGAAGAACAAT
TTGGTGGAATATTATGCATATTAGCCATCACAACATCAGTAAGTAAATCCGCCGAAATACTTGA
AATAAGAATCTCCAAAGATCCAATTGCTTTTTCACCCTGAGAAACCAAGGTTCCAAACAAACCA
ACTAGCTGCTGAGCAGGTCCACTATCACTCACTCCTCTGCTATCACTTGGTCCGGTCGAGGTAG
AAGCAACCCGAGGTAGAGAGACCCCATCATTACCATTTAATCCGTCAGTGGATTCTTCTGACAC
AGAAGGTGTTATTCTTGCACGTTTTCCATCGGAAGCATCTCCATTTAGATCAATATTGTATTCT
GATCCAGATCTTTTCCTACTTAAGTTACTTTCTGCTACATCAGAACTTGCACAGAGAGGATTCT
CTTCCACTGATACCTTGGTATCTTCTACACTGTCTTTGTCCTGAATGCTTCCGTTAGTCTTGTA
AAAGAGATCTTTCGCTTTGGCTGCCTGACCTCCACCTTCTATCTCTTTAAGAGCACTGGTCAAC
CGGTCCGGTGCAGCAGCGGGATGTGTACATTTCAAGCAGGAGAGAAATACAGTCTTCAAGGCAA
GATTTGTTGCTGCAGCATACACTCCTTTGAGAAAGCTTAGGGGATCCAAGCTCAGTAGAACAGG
TAGAATTCGTCCACAGTATGCAGGACGTTTCTTTGCAACTGATGAAAGA

Transcript length: 1399
Transcript exons: 167391-167936,168051-168605,168711-168836,169035-169206
CTCAACTCCTAAATGAGCAAGAAGAGAAAAGCGGAGTTGTGAGCCACCAGACATTGATATTTGC
TTATATGCTTCAACAATGCGCAAAAAAACCAGCTTTTGTAAACTGTCTTTCTCTTCATCAGAAA
GGTCGACAACAGGTGCTGATATCTTAGGTAAGACAAACTGACTCGCCGAAGCAACTGTGCCAAC
CGCCTTTGGACTAAATTCCTCCAACTTATCCACAGACATTGAGGGAATTACATCGACAAGAAGT
TTTCCACTGAAACTCGCATTTTGATTTTTGCTTGCAGCCTCCACATTCGTAGAACTCAATACAT
TAGTAACAAGGGCTCCTGACCCATCATGTTGAGCAGAAGATTCCAGTCCAGGTATTCCACTTTC
TCTATTCCCTATGTAATGCACATTTTGTGGAGACACAGTATTGCTTTCTTCATTTTCTGGAAAA
GAAGTATCACAGGTAGCTAATAAGCCAGGTGGAGTTCTTGCATCTTCAGCTGGAAACATTTGCT
GGTCCACATGAACAGAATAGACTTCCTCATCTTCATTGTGAGGATTTATCAGGGCAGCAATTGG
TGGGAATGCGGTTGACAATGAAAGGACACCCGCTACAAATGATGGTGGATATTTAATTTGTGCA
TCACTGCCAACTATACACATGTTCATCACCAACTCATCGGTGCCATCAGCATAAGAAGAACAAT
TTGGTGGAATATTATGCATATTAGCCATCACAACATCAGTAAGTAAATCCGCCGAAATACTTGA
AATAAGAATCTCCAAAGATCCAATTGCTTTTTCACCCTGAGAAACCAAGGTTCCAAACAAACCA
ACTAGCTGCTGAGCAGGTCCACTATCACTCACTCCTCTGCTATCACTTGGTCCGGTCGAGGTAG
AAGCAACCCGAGGTAGAGAGACCCCATCATTACCATTTAATCCGTCAGTGGATTCTTCTGACAC
AGAAGGTGTTATTCTTGCACGTTTTCCATCGGAAGCATCTCCATTTAGATCAATATTGTATTCT
GATCCAGATCTTTTCCTACTTAAGTTACTTTCTGCTACATCAGAACTTGCACAGAGAGGATTCT
CTTCCACTGATACCTTGGTATCTTCTACACTGTCTTTGTCCTGAATGCTTCCGTTAGTCTTGTA
AAAGAGATCTTTCGCTTTGGCTGCCTGACCTCCACCTTCTATCTCTTTAAGAGCACTGGTCAAC
CGGTCCTTCCACGGTGCAGCAGCGGGATGTGTACATTTCAAGCAGGAGAGAAATACAGTCTTCA
AGGCAAGATTTGTTGCTGCAGCATACACTCCTTTGAGAAAGCTTAGGGGATCCAAGCTCAGTAG
AACAGGTAGAATTCGTCCACAGTATGCAGGACGTTTCTTTGCAACTGATGAAAGA

Genomic sequence CTCAACTCCTAAATGAGCAAGAAGAGAAAAGCGGAGTTGTGAGCCACCAGACATTGATATTTGC
TTATATGCTTCAACAATGCGCAAAAAAACCAGCTTTTGTAAACTGTCTTTCTCTTCATCAGAAA
GGTCGACAACAGGTGCTGATATCTTAGGTAAGACAAACTGACTCGCCGAAGCAACTGTGCCAAC
CGCCTTTGGACTAAATTCCTCCAACTTATCCACAGACATTGAGGGAATTACATCGACAAGAAGT
TTTCCACTGAAACTCGCATTTTGATTTTTGCTTGCAGCCTCCACATTCGTAGAACTCAATACAT
TAGTAACAAGGGCTCCTGACCCATCATGTTGAGCAGAAGATTCCAGTCCAGGTATTCCACTTTC
TCTATTCCCTATGTAATGCACATTTTGTGGAGACACAGTATTGCTTTCTTCATTTTCTGGAAAA
GAAGTATCACAGGTAGCTAATAAGCCAGGTGGAGTTCTTGCATCTTCAGCTGGAAACATTTGCT
GGTCCACATGAACAGAATAGACTTCCTCATCTTCCTGTTATTGGTGAGATTTTAGTGTACAATA
CAACTTTAAAGACGAGAAGGTAAAACAAGGAGCATAAAATATAACACAGATAGAAATACTAAAT
CGAGCAAAGAGCACCCATACATTGTGAGGATTTATCAGGGCAGCAATTGGTGGGAATGCGGTTG
ACAATGAAAGGACACCCGCTACAAATGATGGTGGATATTTAATTTGTGCATCACTGCCAACTAT
ACACATGTTCATCACCAACTCATCGGTGCCATCAGCATAAGAAGAACAATTTGGTGGAATATTA
TGCATATTAGCCATCACAACATCAGTAAGTAAATCCGCCGAAATACTTGAAATAAGAATCTCCA
AAGATCCAATTGCTTTTTCACCCTGAGAAACCAAGGTTCCAAACAAACCAACTAGCTGCTGAGC
AGGTCCACTATCACTCACTCCTCTGCTATCACTTGGTCCGGTCGAGGTAGAAGCAACCCGAGGT
AGAGAGACCCCATCATTACCATTTAATCCGTCAGTGGATTCTTCTGACACAGAAGGTGTTATTC
TTGCACGTTTTCCATCGGAAGCATCTCCATTTAGATCAATATTGTATTCTGATCCAGATCTTTT
CCTACTTAAGTTACTTTCTGCTACATCAGAACTTGCACAGAGAGGATTCTCTTCCACTGATACC
TGTAATTAATAGTTGGCTTTTAAATCTGTATTCAATATACATAAACCAAGAAAACCGGAGAGAC
ACATGCACACACATCGATAAACAAACGAGGAACAAATTACCTTGGTATCTTCTACACTGTCTTT
GTCCTGAATGCTTCCGTTAGTCTTGTAAAAGAGATCTTTCGCTTTGGCTGCCTGACCTCCACCT
TCTATCTCTTTAAGAGCACTGGTCAACCGGTCCTTCCACTGGAGAAAATTGACAGCATACAGAA
AATTGCAAGTTAACTACGAAAATCAACTCCATGGAGAATACACCATCAGAAAATTTATAAGAAT
TAGTTATACCACTATTAGTTAATTACCAGCTCAGCATAATGAAAAAAAATCTATAATATAAAAT
AACAGTGAACCTAATCATTGTAGGTAACTAAAACAAAATAATACCGGTGCAGCAGCGGGATGTG
TACATTTCAAGCAGGAGAGAAATACAGTCTTCAAGGCAAGATTTGTTGCTGCAGCATACACTCC
TTTGAGAAAGCTTAGGGGATCCAAGCTCAGTAGAACAGGTAGAATTCGTCCACAGTATGCAGGA
CGTTTCTTTGCAACTGATGAAAGA
Conservation Information
Conserved circRNAs NA
PMCS 0.182996661
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020