Detail information of Os10g0181333_circ_g.2


General Information
CircRNA Name Os10g0181333_circ_g.2
ID in PlantcircBase osa_circ_006323
Alias NA
Organism Oryza sativa
Position chr10: 5578058-5578344  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os10g0181333
Parent gene annotation Hypothetical protein. (Os10t0181333-00)
Parent gene strand +
Alternative splicing Os10g0181333_circ_g.1
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   CT-CT
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGGAAACGGAAATGCAGATGATGGACGAAAACCAAGATTTCAGCACTAGTAATGAACACAAAC
AACAAGCACTGAGATTAGCAATCTGTGTTGTTTCACctaatgtataagacataacaaacatttc
aagggaaacttatgcaagaattgcttccaaagaatatagctgctatatagcttcctgtagtgga
ttttattc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTAATGTATAAGACATAACAAACATTTCAAGGGAAACTTATGCAAGAATTGCTTCCAAAGAATA
TAGCTGCTATATAGCTTCCTGTAGTGGATTTTATTCAGGATTGACAAAAATATAGCTGCTATAG
AATCACTCTAAAAAGTGTAGTTGCTTTGGACAATAAGACATGGATAACATCTAAATCAAATGGA
AACGGAAATGCAGATGATGGACGAAAACCAAGATTTCAGCACTAGTAATGAACACAAACAACAA
GCACTGAGATTAGCAATCTGTGTTGTTTCAC
Conservation Information
Conserved circRNAs osi_circ_008820
PMCS 0.114111034
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017