Plant Circular RNA Database

Detail information of Zm00001d016995_circ_g.1

			
						 General Information
					
						CircRNA Name
						Zm00001d016995_circ_g.1
					
						ID in PlantcircBase
						zma_circ_008733
					
						Alias
						zma_circ_0001933, ZmciR214
					
						Organism
						
							Zea mays						
					
						Position
						
							chr5: 182281660-182284158  JBrowse»						
					
						Reference genome
						
							AGPv4.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ, CIRI2
					
						Parent gene
						
							Zm00001d016995						
					
						Parent gene annotation
						
							Protein PHYLLO chloroplastic
							
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						NA
					
						Tissues
						leaf, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Zm00001d016995_T001:4

General Information
CircRNA Name	Zm00001d016995_circ_g.1
ID in PlantcircBase	zma_circ_008733
Alias	zma_circ_0001933, ZmciR214
Organism	Zea mays
Position	chr5: 182281660-182284158 JBrowse»
Reference genome	AGPv4.38
Type	e-circRNA
Identification method	find_circ, CIRI2
Parent gene	Zm00001d016995
Parent gene annotation	Protein PHYLLO chloroplastic
Parent gene strand	+
Alternative splicing	NA
Support reads	NA
Tissues	leaf, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Zm00001d016995_T001:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AGATTTTGTTGGCACTGTAGTGGCTGGGAACAGAGGAGCAAGTGGTATTGATGGTTTAATCAGC
ACAGCAGTCGGATTTGCTGTTGGGTCAAACAAGCATgtggttgaggctagtcaagatttcatac
caattatattactcacagctgaccgtcctcctgagttgcatgatgctggagctaaccaagccat
caatcagg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1194
Transcript exons: 182281660-182281758,182282403-182282969,182283094-182283
318,182283856-182284158
GTGGTTGAGGCTAGTCAAGATTTCATACCAATTATATTACTCACAGCTGACCGTCCTCCTGAGT
TGCATGATGCTGGAGCTAACCAAGCCATCAATCAGGTCAATCATTTTGGTACCTTTGTAAGATA
TTTTTTTAACCTCCCTCCACCTGGAGACCGAATCAATGCAAGAATGGTGCTCACTACACTTGAT
TCAGCAGCCTACTATGCAATGCAAGCACCACAAGGCCCCGTGCATATAAACTGTGCTTTTAGAG
AACCACTAGATTACACTAATCAACATTGGAATGTTGATTGTTTGCTAGGTTTGGATAAGTGGTT
TAAAAATAGTGAACCATATACTAAATACGTAAGAATGAAAACAGTTTCTGCATTGGGTAATTAC
TCTTGCTCAGTAATGGAGGTCCTGGAGATCATAGAGAAGGCAGAACAAGGGCTTCTTTTAGTGG
GTGCTATTCATACGGATGAAGATATGTGGGCTGTAGCTTTACTAGCTAGGCACCTATCCTGGCC
AGTTGCTACAGACATTCTGTCTGGACTGCGATTGCGGAAAGTTGTAAATTCATTACCAGGGCTT
GATAAGAGCATTTTGTTTATAGACCACATTGATCAAATTCTGTTGTCTGAGTCTGCTAAAAACT
GGATACGCCCTGATGTCATTGTTCAGATTGGTAGCCGCATTACTAGCAAACGAGTGGGAATGTT
TCTTGAGACTTCCTTCCCATCTTCCTACATATTGATCGATAGGCATCCATGTCGTCATGATCCT
TCACATGTTGTTACTCACAGAATACAAGCTAATGTAGCAGAATTTGCTGCTAGGTTGTGCCGGT
GTACTTTTCAAAGGAAGAGAAGCAGATGGACAGAATTTTTGACCATTCTTAATTCAGTGGTTTG
TCAGGAGATAATGTTTCAGATACATGCGAAGTGCTCACTTACAGAACCATATGTTGCTCATGTA
ATTGGGGAGTCACTTTATGGTGATGCTGTCATGTTTGTTGGGAACAGCATGGTCATCCGAGACT
TAGACATGTTTGGCAACGGTTGGATGGATTACACTACAAATGGAAATAATGTGATGACACATCA
TTTTCCAGATTTTGTTGGCACTGTAGTGGCTGGGAACAGAGGAGCAAGTGGTATTGATGGTTTA
ATCAGCACAGCAGTCGGATTTGCTGTTGGGTCAAACAAGCAT
						
					

						Genomic sequence
						
							GTGGTTGAGGCTAGTCAAGATTTCATACCAATTATATTACTCACAGCTGACCGTCCTCCTGAGT
TGCATGATGCTGGAGCTAACCAAGCCATCAATCAGGTACTTGTGTACATTGTAAAATACAAAAT
TATTGATAACATTTGTCTTACATAAGTTTCAGCAATTCTAAAATTCTGAATTTCTTGCGTACAC
ATTAATATTTGTAGATTCTGCCATTTTCTTAATGGTAATATTGTGTAAATGTGTTTTATATGGC
AAATGAACCCTAATATACATTATACCCATTACCCATTGTTAAAGTATATAAGTGGATTGCTTAC
CTTCTCCTAATAACCTAAGCTTTTAGGTTGAGCTGGTTAGTGTGTCCACTCTAACATGGTACCA
GAGCTAGAGGTCTCGAGTTCGAATCCTGGCAGATGCTTTAATTTTTACCTCCGCTCCTTTATTT
CCACGTTTGCACCTTTCTCTCTAGCTGCATGTGAGTGGGGGTGTTGAAGTGTATAAGTGGATTG
CCTACCTTCTCCTAATAGCTTAAGCTTTTGGGTTGAACTGGTTAATGAGTTCACTCTAACACCC
ATTATCCCCCCCCCCCCACACACACGCAGAAACAACCAATAAATAAACTTGCACTTGTTAGGAT
TGCAATTTCGGCAGTTGACTTTTTCATATTTTTGCTCTCGGCAGACTCATTTACCAGGTTCTAT
CCTTTTTTTTCTGTCTAACAGTTTAATTTCCATTTTCAGGTCAATCATTTTGGTACCTTTGTAA
GATATTTTTTTAACCTCCCTCCACCTGGAGACCGAATCAATGCAAGAATGGTGCTCACTACACT
TGATTCAGCAGCCTACTATGCAATGCAAGCACCACAAGGCCCCGTGCATATAAACTGTGCTTTT
AGAGAACCACTAGATTACACTAATCAACATTGGAATGTTGATTGTTTGCTAGGTTTGGATAAGT
GGTTTAAAAATAGTGAACCATATACTAAATACGTAAGAATGAAAACAGTTTCTGCATTGGGTAA
TTACTCTTGCTCAGTAATGGAGGTCCTGGAGATCATAGAGAAGGCAGAACAAGGGCTTCTTTTA
GTGGGTGCTATTCATACGGATGAAGATATGTGGGCTGTAGCTTTACTAGCTAGGCACCTATCCT
GGCCAGTTGCTACAGACATTCTGTCTGGACTGCGATTGCGGAAAGTTGTAAATTCATTACCAGG
GCTTGATAAGAGCATTTTGTTTATAGACCACATTGATCAAATTCTGTTGTCTGAGTCTGCTAAA
AACTGGATACGCCCTGATGTCATTGTTCAGGTTTACCTTCTCAAACATCATTGAATCTATATTC
TTTGCACTGTTCGCTTTGTCTTTTTTCAGTAATTATGCTGTGTACTTAATATGTCATAAGTTTT
TGAAGTTGATGTGGTTTGATTGGCAGATTGGTAGCCGCATTACTAGCAAACGAGTGGGAATGTT
TCTTGAGACTTCCTTCCCATCTTCCTACATATTGATCGATAGGCATCCATGTCGTCATGATCCT
TCACATGTTGTTACTCACAGAATACAAGCTAATGTAGCAGAATTTGCTGCTAGGTTGTGCCGGT
GTACTTTTCAAAGGAAGAGAAGCAGATGGACAGAATTTTTGACCATTCTTAATTCAGTGGTATG
AGCTGACACATGGTAGCTATCTTGTAAAAGACATAACATGCTTTATGACATACGAACTTGACCT
GGATAATTAATCTTTCTGTACTTAGCCATTTATTATAAGCCTTTAATCCATCATTCTTGCACTA
ATACATTTATTTTATAACGGATAAAAAGGTTCACTGTGCCTTGAATTTTGAATGTAGCAAACAA
GTTGTCATGTGTGTATGTGCCATTACCACGAAACACGTTTGCAAAATTGTCATCAGACCCACAA
TTCATAGACACATGGGTATTTATAACAAGGAGACAACGTTTCAAGTGGCAAAATTCCAATTATT
TCGTTTGTGTGCATGCTATTCGTCACCTTAGGTGATGATCACCCACCCTGTAATGACTTGGTGA
CGAATAGCGCTGCTCTATATATATTTGCTATCATGGCACAACTGGATATTTTATTTGTGCTAGA
GCTCCCGCTCCCTGGGAATAACTGAAAAGGTCTTTTGGCTCTTATGTTATTGTGTTTTATTCTC
ACAACTGTTGCCCATGCCAGGTTTGTCAGGAGATAATGTTTCAGATACATGCGAAGTGCTCACT
TACAGAACCATATGTTGCTCATGTAATTGGGGAGTCACTTTATGGTGATGCTGTCATGTTTGTT
GGGAACAGCATGGTCATCCGAGACTTAGACATGTTTGGCAACGGTTGGATGGATTACACTACAA
ATGGAAATAATGTGATGACACATCATTTTCCAGATTTTGTTGGCACTGTAGTGGCTGGGAACAG
AGGAGCAAGTGGTATTGATGGTTTAATCAGCACAGCAGTCGGATTTGCTGTTGGGTCAAACAAG
CAT
						
					

			
		

Sequences
Splice junction sequence	AGATTTTGTTGGCACTGTAGTGGCTGGGAACAGAGGAGCAAGTGGTATTGATGGTTTAATCAGC ACAGCAGTCGGATTTGCTGTTGGGTCAAACAAGCATgtggttgaggctagtcaagatttcatac caattatattactcacagctgaccgtcctcctgagttgcatgatgctggagctaaccaagccat caatcagg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1194 Transcript exons: 182281660-182281758,182282403-182282969,182283094-182283 318,182283856-182284158 GTGGTTGAGGCTAGTCAAGATTTCATACCAATTATATTACTCACAGCTGACCGTCCTCCTGAGT TGCATGATGCTGGAGCTAACCAAGCCATCAATCAGGTCAATCATTTTGGTACCTTTGTAAGATA TTTTTTTAACCTCCCTCCACCTGGAGACCGAATCAATGCAAGAATGGTGCTCACTACACTTGAT TCAGCAGCCTACTATGCAATGCAAGCACCACAAGGCCCCGTGCATATAAACTGTGCTTTTAGAG AACCACTAGATTACACTAATCAACATTGGAATGTTGATTGTTTGCTAGGTTTGGATAAGTGGTT TAAAAATAGTGAACCATATACTAAATACGTAAGAATGAAAACAGTTTCTGCATTGGGTAATTAC TCTTGCTCAGTAATGGAGGTCCTGGAGATCATAGAGAAGGCAGAACAAGGGCTTCTTTTAGTGG GTGCTATTCATACGGATGAAGATATGTGGGCTGTAGCTTTACTAGCTAGGCACCTATCCTGGCC AGTTGCTACAGACATTCTGTCTGGACTGCGATTGCGGAAAGTTGTAAATTCATTACCAGGGCTT GATAAGAGCATTTTGTTTATAGACCACATTGATCAAATTCTGTTGTCTGAGTCTGCTAAAAACT GGATACGCCCTGATGTCATTGTTCAGATTGGTAGCCGCATTACTAGCAAACGAGTGGGAATGTT TCTTGAGACTTCCTTCCCATCTTCCTACATATTGATCGATAGGCATCCATGTCGTCATGATCCT TCACATGTTGTTACTCACAGAATACAAGCTAATGTAGCAGAATTTGCTGCTAGGTTGTGCCGGT GTACTTTTCAAAGGAAGAGAAGCAGATGGACAGAATTTTTGACCATTCTTAATTCAGTGGTTTG TCAGGAGATAATGTTTCAGATACATGCGAAGTGCTCACTTACAGAACCATATGTTGCTCATGTA ATTGGGGAGTCACTTTATGGTGATGCTGTCATGTTTGTTGGGAACAGCATGGTCATCCGAGACT TAGACATGTTTGGCAACGGTTGGATGGATTACACTACAAATGGAAATAATGTGATGACACATCA TTTTCCAGATTTTGTTGGCACTGTAGTGGCTGGGAACAGAGGAGCAAGTGGTATTGATGGTTTA ATCAGCACAGCAGTCGGATTTGCTGTTGGGTCAAACAAGCAT
Genomic sequence	GTGGTTGAGGCTAGTCAAGATTTCATACCAATTATATTACTCACAGCTGACCGTCCTCCTGAGT TGCATGATGCTGGAGCTAACCAAGCCATCAATCAGGTACTTGTGTACATTGTAAAATACAAAAT TATTGATAACATTTGTCTTACATAAGTTTCAGCAATTCTAAAATTCTGAATTTCTTGCGTACAC ATTAATATTTGTAGATTCTGCCATTTTCTTAATGGTAATATTGTGTAAATGTGTTTTATATGGC AAATGAACCCTAATATACATTATACCCATTACCCATTGTTAAAGTATATAAGTGGATTGCTTAC CTTCTCCTAATAACCTAAGCTTTTAGGTTGAGCTGGTTAGTGTGTCCACTCTAACATGGTACCA GAGCTAGAGGTCTCGAGTTCGAATCCTGGCAGATGCTTTAATTTTTACCTCCGCTCCTTTATTT CCACGTTTGCACCTTTCTCTCTAGCTGCATGTGAGTGGGGGTGTTGAAGTGTATAAGTGGATTG CCTACCTTCTCCTAATAGCTTAAGCTTTTGGGTTGAACTGGTTAATGAGTTCACTCTAACACCC ATTATCCCCCCCCCCCCACACACACGCAGAAACAACCAATAAATAAACTTGCACTTGTTAGGAT TGCAATTTCGGCAGTTGACTTTTTCATATTTTTGCTCTCGGCAGACTCATTTACCAGGTTCTAT CCTTTTTTTTCTGTCTAACAGTTTAATTTCCATTTTCAGGTCAATCATTTTGGTACCTTTGTAA GATATTTTTTTAACCTCCCTCCACCTGGAGACCGAATCAATGCAAGAATGGTGCTCACTACACT TGATTCAGCAGCCTACTATGCAATGCAAGCACCACAAGGCCCCGTGCATATAAACTGTGCTTTT AGAGAACCACTAGATTACACTAATCAACATTGGAATGTTGATTGTTTGCTAGGTTTGGATAAGT GGTTTAAAAATAGTGAACCATATACTAAATACGTAAGAATGAAAACAGTTTCTGCATTGGGTAA TTACTCTTGCTCAGTAATGGAGGTCCTGGAGATCATAGAGAAGGCAGAACAAGGGCTTCTTTTA GTGGGTGCTATTCATACGGATGAAGATATGTGGGCTGTAGCTTTACTAGCTAGGCACCTATCCT GGCCAGTTGCTACAGACATTCTGTCTGGACTGCGATTGCGGAAAGTTGTAAATTCATTACCAGG GCTTGATAAGAGCATTTTGTTTATAGACCACATTGATCAAATTCTGTTGTCTGAGTCTGCTAAA AACTGGATACGCCCTGATGTCATTGTTCAGGTTTACCTTCTCAAACATCATTGAATCTATATTC TTTGCACTGTTCGCTTTGTCTTTTTTCAGTAATTATGCTGTGTACTTAATATGTCATAAGTTTT TGAAGTTGATGTGGTTTGATTGGCAGATTGGTAGCCGCATTACTAGCAAACGAGTGGGAATGTT TCTTGAGACTTCCTTCCCATCTTCCTACATATTGATCGATAGGCATCCATGTCGTCATGATCCT TCACATGTTGTTACTCACAGAATACAAGCTAATGTAGCAGAATTTGCTGCTAGGTTGTGCCGGT GTACTTTTCAAAGGAAGAGAAGCAGATGGACAGAATTTTTGACCATTCTTAATTCAGTGGTATG AGCTGACACATGGTAGCTATCTTGTAAAAGACATAACATGCTTTATGACATACGAACTTGACCT GGATAATTAATCTTTCTGTACTTAGCCATTTATTATAAGCCTTTAATCCATCATTCTTGCACTA ATACATTTATTTTATAACGGATAAAAAGGTTCACTGTGCCTTGAATTTTGAATGTAGCAAACAA GTTGTCATGTGTGTATGTGCCATTACCACGAAACACGTTTGCAAAATTGTCATCAGACCCACAA TTCATAGACACATGGGTATTTATAACAAGGAGACAACGTTTCAAGTGGCAAAATTCCAATTATT TCGTTTGTGTGCATGCTATTCGTCACCTTAGGTGATGATCACCCACCCTGTAATGACTTGGTGA CGAATAGCGCTGCTCTATATATATTTGCTATCATGGCACAACTGGATATTTTATTTGTGCTAGA GCTCCCGCTCCCTGGGAATAACTGAAAAGGTCTTTTGGCTCTTATGTTATTGTGTTTTATTCTC ACAACTGTTGCCCATGCCAGGTTTGTCAGGAGATAATGTTTCAGATACATGCGAAGTGCTCACT TACAGAACCATATGTTGCTCATGTAATTGGGGAGTCACTTTATGGTGATGCTGTCATGTTTGTT GGGAACAGCATGGTCATCCGAGACTTAGACATGTTTGGCAACGGTTGGATGGATTACACTACAA ATGGAAATAATGTGATGACACATCATTTTCCAGATTTTGTTGGCACTGTAGTGGCTGGGAACAG AGGAGCAAGTGGTATTGATGGTTTAATCAGCACAGCAGTCGGATTTGCTGTTGGGTCAAACAAG CAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.119897

Conservation Information
Conserved circRNAs	NA
PMCS	0.119897

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							182282476-182284155(+)
182284158-182282424(+)
						
					

						Potential amino acid sequence
						
							MVLTTLDSAAYYAMQAPQGPVHINCAFREPLDYTNQHWNVDCLLGLDKWFKNSEPYTKYVRMKT
VSALGNYSCSVMEVLEIIEKAEQGLLLVGAIHTDEDMWAVALLARHLSWPVATDILSGLRLRKV
VNSLPGLDKSILFIDHIDQILLSESAKNWIRPDVIVQIGSRITSKRVGMFLETSFPSSYILIDR
HPCRHDPSHVVTHRIQANVAEFAARLCRCTFQRKRSRWTEFLTILNSVVCQEIMFQIHAKCSLT
EPYVAHVIGESLYGDAVMFVGNSMVIRDLDMFGNGWMDYTTNGNNVMTHHFPDFVGTVVAGNRG
ASGIDGLISTAVGFAVGSNKHVVEASQDFIPIILLTADRPPELHDAGANQAINQVNHFGTFVRY
FFNLPPPGDRINARMVLTTLDSAAYYAMQAPQGPVHINCAFREPLDYTNQHWNVDCLLGLDKWF
KNSEPYTKYVRMKTVSALGNYSCSVMEVLEIIEKAEQGLLLVGAIHTDEDMWAVALLARHLSWP
VATDILSGLRLRKVVNSLPGLDKSILFIDHIDQILLSESAKNWIRPDVIVQIGSRITSKRVGMF
LETSFPSSYILIDRHPCRHDPSHVVTHRIQANVAEFAARLCRCTFQRKRSRWTEFLTILNSVVC
QEIMFQIHAKCSLTEPYVAHVIGESLYGDAVMFVGNSMVIRDLDMFGNGWMDYTTNGNNVMTHH
FPDFVGTVVAGNRGASGIDGLISTAVGFAVGSNKHVVEASQDFIPIILLTADRPPELHDAGANQ
AINQVNHFGTFVRYFFNLPPPGDRINARMVLTTLDSAAYYAMQAPQGPVHINCAFREPLDYTNQ
HWNVDCLLGLDKWFKNSEPYTKYVRMKTVSALGNYSCSVMEVLEIIEKAEQGLLLVGAIHTDED
MWAVALLARHLSWPVATDILSGLRLRKVVNSLPGLDKSILFIDHIDQILLSESAKNWIRPDVIV
QIGSRITSKRVGMFLETSFPSSYILIDRHPCRHDPSHVVTHRIQANVAEFAARLCRCTFQRKRS
RWTEFLTILNSVVCQEIMFQIHAKCSLTEPYVAHVIGESLYGDAVMFVGNSMVIRDLDMFGNGW
MDYTTNGNNVMTHHFPDFVGTVVAGNRGASGIDGLISTAVGFAVGSNKHVVEASQDFIPIILLT
ADRPPELHDAGANQAINQVNHFGTFVRYFFNLPPPGDRINARMVLTTLDSAAYYAMQAPQGPVH
INCAFREPLDYTNQHWNVDCLLGLDKWFKNSEPYTKYVRMKTVSALGNYSCSVMEVLEIIEKAE
QGLLLVGAIHTDEDMWAVALLARHLSWPVATDILSGLRLRKVVNSLPGLDKSILFIDHIDQILL
SESAKNWIRPDVIVQIGSRITSKRVGMFLETSFPSSYILIDRHPCRHDPSHVVTHRIQANVAEF
AARLCRCTFQRKRSRWTEFLTILNSVVCQEIMFQIHAKCSLTEPYVAHVIGESLYGDAVMFVGN
SMVIRDLDMFGNGWMDYTTNGNNVMTHHFPDFVGTVVAGNRGASGIDGLISTAVGFAVGSNKH(
+)
MWLRLVKISYQLYYSQLTVLLSCMMLELTKPSIRSIILVPL*(+)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						responsive to drought stress
					

			
		

Functional Information
Coding potential	Y
Potential coding position	182282476-182284155(+) 182284158-182282424(+)
Potential amino acid sequence	MVLTTLDSAAYYAMQAPQGPVHINCAFREPLDYTNQHWNVDCLLGLDKWFKNSEPYTKYVRMKT VSALGNYSCSVMEVLEIIEKAEQGLLLVGAIHTDEDMWAVALLARHLSWPVATDILSGLRLRKV VNSLPGLDKSILFIDHIDQILLSESAKNWIRPDVIVQIGSRITSKRVGMFLETSFPSSYILIDR HPCRHDPSHVVTHRIQANVAEFAARLCRCTFQRKRSRWTEFLTILNSVVCQEIMFQIHAKCSLT EPYVAHVIGESLYGDAVMFVGNSMVIRDLDMFGNGWMDYTTNGNNVMTHHFPDFVGTVVAGNRG ASGIDGLISTAVGFAVGSNKHVVEASQDFIPIILLTADRPPELHDAGANQAINQVNHFGTFVRY FFNLPPPGDRINARMVLTTLDSAAYYAMQAPQGPVHINCAFREPLDYTNQHWNVDCLLGLDKWF KNSEPYTKYVRMKTVSALGNYSCSVMEVLEIIEKAEQGLLLVGAIHTDEDMWAVALLARHLSWP VATDILSGLRLRKVVNSLPGLDKSILFIDHIDQILLSESAKNWIRPDVIVQIGSRITSKRVGMF LETSFPSSYILIDRHPCRHDPSHVVTHRIQANVAEFAARLCRCTFQRKRSRWTEFLTILNSVVC QEIMFQIHAKCSLTEPYVAHVIGESLYGDAVMFVGNSMVIRDLDMFGNGWMDYTTNGNNVMTHH FPDFVGTVVAGNRGASGIDGLISTAVGFAVGSNKHVVEASQDFIPIILLTADRPPELHDAGANQ AINQVNHFGTFVRYFFNLPPPGDRINARMVLTTLDSAAYYAMQAPQGPVHINCAFREPLDYTNQ HWNVDCLLGLDKWFKNSEPYTKYVRMKTVSALGNYSCSVMEVLEIIEKAEQGLLLVGAIHTDED MWAVALLARHLSWPVATDILSGLRLRKVVNSLPGLDKSILFIDHIDQILLSESAKNWIRPDVIV QIGSRITSKRVGMFLETSFPSSYILIDRHPCRHDPSHVVTHRIQANVAEFAARLCRCTFQRKRS RWTEFLTILNSVVCQEIMFQIHAKCSLTEPYVAHVIGESLYGDAVMFVGNSMVIRDLDMFGNGW MDYTTNGNNVMTHHFPDFVGTVVAGNRGASGIDGLISTAVGFAVGSNKHVVEASQDFIPIILLT ADRPPELHDAGANQAINQVNHFGTFVRYFFNLPPPGDRINARMVLTTLDSAAYYAMQAPQGPVH INCAFREPLDYTNQHWNVDCLLGLDKWFKNSEPYTKYVRMKTVSALGNYSCSVMEVLEIIEKAE QGLLLVGAIHTDEDMWAVALLARHLSWPVATDILSGLRLRKVVNSLPGLDKSILFIDHIDQILL SESAKNWIRPDVIVQIGSRITSKRVGMFLETSFPSSYILIDRHPCRHDPSHVVTHRIQANVAEF AARLCRCTFQRKRSRWTEFLTILNSVVCQEIMFQIHAKCSLTEPYVAHVIGESLYGDAVMFVGN SMVIRDLDMFGNGWMDYTTNGNNVMTHHFPDFVGTVVAGNRGASGIDGLISTAVGFAVGSNKH( +) MWLRLVKISYQLYYSQLTVLLSCMMLELTKPSIRSIILVPL*(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	responsive to drought stress

			
						 Other Information
					
						References
						Ma et al., 2021b;Zhang et al., 2019

circRNA

Detail information of Zm00001d016995_circ_g.1

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