Detail information of Solyc09g009370.2_circ_g.2


General Information
CircRNA Name Solyc09g009370.2_circ_g.2
ID in PlantcircBase sly_circ_002780
Alias NA
Organism Solanum lycopersicum
Position chr9: 2777072-2781249  JBrowse»
Reference genome SL2.50.38
Type   e-circRNA
Identification method CIRI; find_circ
Parent gene Solyc09g009370.2
Parent gene annotation protein_coding
Parent gene strand +
Alternative splicing Solyc09g009370.2_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Solyc09g009370.2.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTCTCCGGAGTTCACTTTTTTTGATAGTAGTAAATCATCTTTGGATGACTTTGCTCATGCTGA
AAAACTCCTCCGGGCAAAAATGGACCTTAATTTCATgttggattattacatggaatgatgacag
ataaagaatataatgtcattcttgattgtttctacatgaatttctcagagagtccgacacttcc
acctagtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTGGATTATTACATGGAATGATGACAGATAAAGAATATAATGTCATTCTTGATTGTTTCTACA
TGAATTTCTCAGAGAGTCCGACACTTCCACCTAGTTTCCGCAGCAGCACTTCTGCTTCAAAAGA
TACAATAAAAATGCTGGCTGATAAAGTGAATGTAAACAGTCAAATACTCCTATCACGAACGGTT
ACTATAATGGCTGTGGAAGTGGGATATGCCTTGTTGGAGTTGTGGAATGACGCTCATGAGGGGT
CATGCTTGGCTCATGTTGCGGTACGTCATTTTGTATGAGACACTAAATTATGATATGTATGGTC
CCAACATGAAGAGTTCGATTTAAGCTTTGTCTAACAAATAGCTACTGTCTTCTCTCCGGTTCTC
CTCTGTTTTTTTTCAGTAGCAAGTTGTTGTTTGGTCATTGTATCATTGTTAATTGTAATTTGTA
TCTATGTCACATTTTACCTTACTGTAGTCATTGTCTTTTGCAGCTTGAAGATCTTTGGGTGTCG
TACCGAATGACATCATTATCGGAGGCTGATCTCTACATTACTATCCCAAAATTCTCTATTTTAG
ATATTCGCCCAGATACAAAGGTTGAAATGAGGCTGATGCTTGGGTCATGCATTGATGCTCATCG
ACAGAACTCTTCTGAAATTGGTGTTGACTTTCCAACTTCAACAATGGTTGTGATGGACTGCAGA
TGGAGATTGGCATCCCAATCATTTGTTCTACGGATACAGCAGCCTCGTATTCTTGTTGTACCAG
ATTTCTTACTATCTGTTTGTGAGTTTTTCGTGCCATCTTTGGGAGCAATGACTGGTAGAGAGGA
AATCATGGATCCCAAGAATGATCCAATTAGTAAAAGTAACAGCATAATCCTCTCCACACCTCTT
TATGAGCAGAAAGAGGATTTAGTATTATTATCTCCCAATAGACAACTAGTTGCGGATGCTGTAG
GGATCGATGAATACACCTATGATGGTTGTGGTAAAACAATACACCTGACTGATAAGGTGGAAGT
AAAGGGGCTTCACTCATCGGGAATTCAACATATTATCATTATTGGTCGTGGGAAGAGACTGAGA
TTTGTGAATGTGAAAATTGAGGTACCAACAACTCTACTTCAGTACTGGCTTGGATAATGTCAAT
TTGAAGAGCACCCATTATGCAGTAGTTAAATATTTTTTTTTTTTGTGTTGACTTGTTGACTTTG
TGAATACGGAAGGTGCATGATCATCTTCCTAGTCATGGAAAAGCTCTTAGTCCAGTGAAAATGA
CCTCGTACCTTTAAAATGTTTCTTTTGCAGAATGGCTTGCTTTTAAGGAGATATACTTACCTAA
GCAACGAAAGCAGCTACTCGGTCAGCCAAGAAGATGGTGTTGATGTAAGGATTTCTGACAGTAA
TTCTGACGATGATGAAAGTATGAAGTCCATGGAAGCATTATTGTACAACTCAGATGCTTCCGAC
TTTGACCCGAATGGATCATATAAAGTACAAAGTTACAGTTTTGAGGCCCAGGTAAATATCGATT
AATTTAAAATTCTCTCTGTGTTTGTTTTCTTCATATGTAAATTGTGGGAATGACATTATGGTGT
TAGTCTTTGTTTATATATATTTCCATACTAGTTGTTCTTGTGATGTAATTCTCATGATTAGCAG
CATTTGCACATACTGAATACAATTGGGTGCCCAACAACAAAATAGTCAAAAAATAAATACACAA
AGCAAACATTGTCTAACTTTAAGACCTACCACATGACAACTGAGTTTGTTTTTCTTTTTTGTTA
GTATCTTAAATTGAATTTGTTATGTGTGAGCTCCTACTATCTCAAGTATTGTTTCATGGTTATA
ATCAACCTCATTTCTGGAAAAGATATCCTATTTATCTTTTTAATAACCAGGTATTGCATTGATC
TTAAAATTATTATTTTCCTTTTTCTGTGCAGTTAAGGGTAGATTTATATGAATGATTGGAAATG
TGATGTAGTTCGTTTACATGAGAATGCTTGAGAACCTTTTTAGAAGACGGGAAGCAGTGTGCCT
TACTAGTGATATTGATTTATGAAAATGATAAAATGCATCGTCAATAGATTTCATAGGTTTAACC
ATCTGTTAGCTAATTTTGTTAGAGGGCTGTCAGTCTTTGCTGTTAATGCTAACTATTTCTTTAC
CCATCAAGTATACAAGGTTGACTCACACAGCTAGTGCTCTAGCTGCTGTAAAGAAAAGACTGAG
GGTCGTAAACTCGCACATTCTTTTGTGGGTTATTTTGATCATATGGGGTGAGAGGACCTATAAT
CTTTTTTGTTTATACAGAACTGTGAAAGGAGAGAAAAGAAAAGAGACTTCTTAATGACTTTTTT
GAATAGCAATGTACAGGAAATGTTCCTTAGTCTGAGTTAGCACAATATAGAAAGTATTTATTCT
CTAATTCTAGCAAGCTTTCTACTAGAAATGCATTATATCTGCAGTATTCAAGAAAATATTGTGT
AGTGTTCTCCAATATTCAACTATTTAAGTTCAATGGATCTAGACACACAATATTATTAATTCTC
GTCGCCGATGGGATGGTTGAGTGATTGAAGCATAGGAATAACATCCTGGAGATTCTAGGTTTGG
ACTCCAGTTTGAACATAAGTGTGAGCCCATCTGCTTTATCTTACAAGTTCAATTCAAACTTGTG
TGAGTGGGCCATAGTAGATCCATGCAAAATAGTGGTTATGACGCTATGGTGAGTTCATGAGAAG
AATTATTGTTCCTTAGGAACAGTGACAGGAAATTCAATGGTCAAATAACATCAAGAAGACTTTT
TGGATTAGTTACTGAGTGATGTTCAGAAGAGGGACTAAATATCTAACATGCCCCCTCAAGCTCC
AGATGGTAAAGCAACTTGAGTTTGAGTTACTAGAATTTAGTAACATAAAAAGGTTTTCCATCTT
TTTATCCTCACCTTCGGGCATAAACAGTACATTGTTGGGGATGGATATTTGGATCCTTGTAATC
TGATTTCAATTTATTCCCTACAAACACTATTCATGTTGGATAGTGACAGGAAATTCAATGGTCA
AATAGCATCAAGAACAAGACTTTCTGGATCAGCGACTTTGTAATGTTCAGAAGAGGGAAGTTGT
GTGGTTACTGGCTAAGGAAGTTGTGTTGACACAGGAGAATTTGATGAAGAGGGGGATTACAGTG
TGTTCAAGATGTTTTTTTTGTGTGTGTGGAAACTGCAGAAACAGTCAATCACTTGTTCATCCAG
TGCAAGGTCACTGGCCAATTGTGGAATCTATTTTAAGGCTCAAAAACATCTCATTGGTCCATGC
CTGGTAAAACTGCAGAGGCCTTATACAGTTGGGAAGAAGCAGGATTGCAAGCAAAGAACAGAAG
CAACTGGAGAATTATTCCTGCTACTATTTGGTGGACTGTCTGGAAAGAGAGAAATCTTGGAGTT
TTTGGCAATAGGGAGAGTAATATGCAGCAAGTAAAATTGAATTGTGTTCTAACTTCGTTATTTT
GGTGTAATACGATCTACTCTAATGATACTGTCTCTATCATTGATGTTTTAGACTCATTATAGGG
ATAGGACAGTGCCTATAGGGTTGATTATGTAAATATGGTTTTCAGTACAACCCATGTACTGATT
TAAATAAATAGAAACGGTTACCAATCTCAAAAAAAAAATGTTCAGTAGAGGGACGAAATAACTA
ACATGCCCCCTCAAACTGCAGATGGGAAAGCAACTTGAGTTTGAGTTACTGGAATTTAGCAACA
TAAAAAGTTTTTCCATCTTTTTATCCTCACCTTCGGGCATAAAGTTTTTCCATCTTTTTATCCT
CAACATAATTGGGGATGTATATTTGGATCCTTGTAATCCGTTATCAATTTATTCTCTACGAATA
CTATTCATGTTTGATATTTTATCTGTAGGACTTATTTTTCTTCATCAACTTGTTATCTTGGTAT
TCCATTGATTCTGTTTGCAGTGTAATACACTCTCAAATTTCATTCTGGCTCTTACTTTTTTCTA
GTTTGAGGCATAATGGATTGATTGTTATATTGCCTCTCCTAGGTTGTCTCTCCGGAGTTCACTT
TTTTTGATAGTAGTAAATCATCTTTGGATGACTTTGCTCATGCTGAAAAACTCCTCCGGGCAAA
AATGGACCTTAATTTCAT
Conservation Information
Conserved circRNAs NA
PMCS 0.149103064
Functional Information
Coding potential Y
Potential coding position 2777091-2777090(+)
2778534-2777100(+)
Potential amino acid sequence MMTDKEYNVILDCFYMNFSESPTLPPSFRSSTSASKDTIKMLADKVNVNSQILLSRTVTIMAVE
VGYALLELWNDAHEGSCLAHVALEDLWVSYRMTSLSEADLYITIPKFSILDIRPDTKVEMRLML
GSCIDAHRQNSSEIGVDFPTSTMVVMDCRWRLASQSFVLRIQQPRILVVPDFLLSVCEFFVPSL
GAMTGREEIMDPKNDPISKSNSIILSTPLYEQKEDLVLLSPNRQLVADAVGIDEYTYDGCGKTI
HLTDKVEVKGLHSSGIQHIIIIGRGKRLRFVNVKIENGLLLRRYTYLSNESSYSVSQEDGVDVR
ISDSNSDDDESMKSMEALLYNSDASDFDPNGSYKVQSYSFEAQVVSPEFTFFDSSKSSLDDFAH
AEKLLRAKMDLNFMLDYYME*(+)
MLPTLTRMDHIKYKVTVLRPRLSLRSSLFLIVVNHLWMTLLMLKNSSGQKWTLISCWIITWNDD
R*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Yang et al., 2020