Detail information of AT1G77320_circ_g.1


General Information
CircRNA Name AT1G77320_circ_g.1
ID in PlantcircBase ath_circ_010615
Alias NA
Organism Arabidpsis thaliana
Position chr1: 29059001-29061897  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT1G77320
Parent gene annotation transcription coactivators
Parent gene strand +
Alternative splicing AT1G77320_circ_g.2 AT1G77320_circ_g.3
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AC
Number of exons covered AT1G77320.2:8
AT1G77320.3:8
AT1G77320.1:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCAATTATTTAATCCAAGTCATATTTTCTCTGTATTCACGTCTGGTCTTCTGTTTAGATTCAA
GATCAGAAGTCTCCTGGGAGGATTTTAGAAAAGACTgctgctgaaggtgacaaatacaaagttg
ctcgaaaatggggtcacattcaaattgtcacacggaaatggtttcagcagtccatcgataaaaa
gggtgacg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTGCTGAAGGTGACAAATACAAAGTTGCTCGAAAATGGGGTCACATTCAAATTGTCACACGGA
AATGGTTTCAGCAGTCCATCGATAAAAAGGGTGACGTTGGGTGCTTCTGCATTTTATACATTCT
CTTACTGATCAGTGATCGGTATATTGGCTCTCTATAAGTTAACAGATTCATTCGATACTGATAT
GTCACCTTGTTATGCGCAGTTTGTCTCAATGAAGAGTCATATCCTGTTCTCGGTTCCATACCCT
TGACAAGAGGAGTGCGAGATTTGGGGGTTCATAATGGTCTAGAAAAGTTTCCTTCGGCTGCAAC
TGCGTCCGCGGCAGATTCATATGTTTCTTGTGCTCAGTCTAGAGACTCAGATATAGAAGCTTCT
GCTTCACAAAATGTTTTTCCCACTTCTATGAATCCCAGTACCGATGTTAAAGAACCAGGTGGAG
GCCCAACGGCAAGGCCGCAAGAGCAAAACATTGATGGTTGTACTGCCAGGGATTCAGAATCCGA
AGACAATGACTTGTACTTATCAGATTGTAGAATTTTCTTGCTTGGTTTTGAAGCTTCTGAAATG
CGTAAACTTGCTAAGTTGGTCCGCAGAGGTGGTGGATCCCGGTATATGCTGCTTAACGAAAGAA
TGACTCATATTGTTGTTGGAACTCCTTCAGAGAGGTAAACATTGGGTTCGATTTTGCTCTATCA
GCTTTTTCCTTTTTTCTCTTGTAGCATTGGTCGAGTTCTGTTAGGTGGGTCTCTCTAAGCATAT
TCTCTGTAACATAATGATCTCTACATAAAATATTCTTTTGTAGTGAGAAAAGAGAAGCAAGGAG
TGTTGCAGCTTCTGGTGTCATTCAAGTAGTCATACCCAGTTGGCTTGAAGATTGTGATCGTGAG
AAAAAAGAAATCCCCGTTCATAATATATATACTGCTAACCACTTGATTCTTCCAAGAGGTCTGC
TGTTATCTCATTTAACCATTTTTTAATTATCTCAGACACATGTCATCTATCTAATATGCATCAA
GACATATCAATGCGTTATATTACACTTTTCTAAGTGACTTTTTTTTGTGTGCAGATTCTGCATG
CTTGACCAAGGGGTCATTTGCAAGGATGTCAAGTATGGAACAGACTAAAAATACTCACGACCAG
ACCATGGTATATGATTCTTCTTCAAGGAGTATCAATGTCTCAAATGGGCCAGCAACTTTACTGG
GAAAAAACAAAGAAGCAATGCAGGAATTTGGCAGAAAAGATGAGATTCATACAGGAAGAAAAAT
AGTATCACCCACGCAAAAAGAAACACTTATTTCCCTTGTAACTTGTGAAAGCAAAGAACAACGG
AGTATTCAATGTGAATTCAGTGGTCAGAACGATCAAGAAAGAAAGTCATCTGTATTTAAGGGGG
AAACATTTTGTTTCTCGCATTCTTTTCCTGAAGATAGGGTATGTGGTTATCAAAGAATCAATTT
TCCTTGTTTTGCACTAGTTTCTTGTCTGAGAATGCATCTCCGAGGTCTATTGATTGATGTGTTA
CCAATTTGTGCAGCGACCGCAAATCGTGGAATGGGTGAATCAAGGAGGGGGAGAGGTGGTAAAT
GATCCTTTGATAAATAACGCACATTTTACTATTGAATGCCATGGTGGGTTCCAAAGTACCGAGA
CTACCCAAACTATCTATGTCTCAAGTCATTGGGTTCGAAATTGTTTAAAGGTATTATTCTTCTC
GGCATTCATCTGTTAGTTACCGATTGTATTATTTGTTGGAAATAATATTCTGGTGTACTCAGTG
TCCAACTGTCATACCATCATCCAGTTAAAGCTTTTATATCTACATGAATTTTTCATTAAAATTG
ATTTGTATCTATTATCTTCTACTTTCTAGTTTCTATTATATGCGTTTATATCCTATATATACTT
CATTTTTCAGGCTTATTGTCTGATTTGTTATCTTGATGATGTAGGTTGGTTGTTTACTTGCTGT
TAGTAGTCATATCCTCTACTCACCTCTTCCCTGCCAGACACCTTTGCCTGGATTCGAAAGCCTT
TGCATATGTAGTTCCCAACATAATGAGAAGAATGTAGAACTCCTGAGAAATTTGAGTGTCGTTC
TTGGAGCAGATTTTGTGGAAAGACTAACCAGGAAAGTGACTCACTTGATATGCAACTTTGCAAA
AGGAGATAAGTATGTGAGAGCTTCCAAGTGGGGAATAATTTCCGTGACACCTGACTGGCTTTAT
GAATGTGTTAGACAGGTGGGCCTCCAGGGATTCAATATCTTTGAAATAGTTTCTTTGACATGGG
ATCTTAAATTTAACGGATAGTTCTTTTTGAATTTCTTATGTGTAGAATCAAGTTGTTTGTACAG
ATAACTTCCATCCAAGGGAATTGACCACTCAAGATCGAGAAGCAGGGTCTCAGTTTCATACACA
GTTTGTACCAATGGCCTCAAGGGACAGTATGTCTCTACCTGTAAGTCACTCTGAAGACAGGGAA
AAAATTCAAAGTTTTGCTGGCAAAAGTGGTTGCGGGAAAGGTGAAGTATATAACAGACTTGGAG
AAATTGGAAAGGAACAAACTTTTCCGTCTAAGAAGGCAAAACTTTTGAGAGATGGTCAAGAAAG
TGATGTGTTTCCTGTGAGAGAACTTCCAAGCAATTGTGATCGTCCTTCGCATTCTGGAGATGGC
ATTGTGACTGGATATGATGTAGCAAGTGGTCGTGAAGTTCCAGATGTGGCTGATACTATTGAGG
ATCTGTTAGAGCAGACAAGCAAAGTAAGTACTTTTTGCTTCTTTCTCCAATTATTTAATCCAAG
TCATATTTTCTCTGTATTCACGTCTGGTCTTCTGTTTAGATTCAAGATCAGAAGTCTCCTGGGA
GGATTTTAGAAAAGACT
Conservation Information
Conserved circRNAs NA
PMCS 0.136024822
Functional Information
Coding potential Y
Potential coding position 29059412-29061894(+)
Potential amino acid sequence MNPSTDVKEPGGGPTARPQEQNIDGCTARDSESEDNDLYLSDCRIFLLGFEASEMRKLAKLVRR
GGGSRYMLLNERMTHIVVGTPSESEKREARSVAASGVIQVVIPSWLEDCDREKKEIPVHNIYTA
NHLILPRDSACLTKGSFARMSSMEQTKNTHDQTMVYDSSSRSINVSNGPATLLGKNKEAMQEFG
RKDEIHTGRKIVSPTQKETLISLVTCESKEQRSIQCEFSGQNDQERKSSVFKGETFCFSHSFPE
DRRPQIVEWVNQGGGEVVNDPLINNAHFTIECHGGFQSTETTQTIYVSSHWVRNCLKVGCLLAV
SSHILYSPLPCQTPLPGFESLCICSSQHNEKNVELLRNLSVVLGADFVERLTRKVTHLICNFAK
GDKYVRASKWGIISVTPDWLYECVRQNQVVCTDNFHPRELTTQDREAGSQFHTQFVPMASRDSM
SLPVSHSEDREKIQSFAGKSGCGKGEVYNRLGEIGKEQTFPSKKAKLLRDGQESDVFPVRELPS
NCDRPSHSGDGIVTGYDVASGREVPDVADTIEDLLEQTSKIQDQKSPGRILEKTAAEGDKYKVA
RKWGHIQIVTRKWFQQSIDKKVCLNEESYPVLGSIPLTRGVRDLGVHNGLEKFPSAATASAADS
YVSCAQSRDSDIEASASQNVFPTSMNPSTDVKEPGGGPTARPQEQNIDGCTARDSESEDNDLYL
SDCRIFLLGFEASEMRKLAKLVRRGGGSRYMLLNERMTHIVVGTPSESEKREARSVAASGVIQV
VIPSWLEDCDREKKEIPVHNIYTANHLILPRDSACLTKGSFARMSSMEQTKNTHDQTMVYDSSS
RSINVSNGPATLLGKNKEAMQEFGRKDEIHTGRKIVSPTQKETLISLVTCESKEQRSIQCEFSG
QNDQERKSSVFKGETFCFSHSFPEDRRPQIVEWVNQGGGEVVNDPLINNAHFTIECHGGFQSTE
TTQTIYVSSHWVRNCLKVGCLLAVSSHILYSPLPCQTPLPGFESLCICSSQHNEKNVELLRNLS
VVLGADFVERLTRKVTHLICNFAKGDKYVRASKWGIISVTPDWLYECVRQNQVVCTDNFHPREL
TTQDREAGSQFHTQFVPMASRDSMSLPVSHSEDREKIQSFAGKSGCGKGEVYNRLGEIGKEQTF
PSKKAKLLRDGQESDVFPVRELPSNCDRPSHSGDGIVTGYDVASGREVPDVADTIEDLLEQTSK
IQDQKSPGRILEKTAAEGDKYKVARKWGHIQIVTRKWFQQSIDKKVCLNEESYPVLGSIPLTRG
VRDLGVHNGLEKFPSAATASAADSYVSCAQSRDSDIEASASQNVFPTSMNPSTDVKEPGGGPTA
RPQEQNIDGCTARDSESEDNDLYLSDCRIFLLGFEASEMRKLAKLVRRGGGSRYMLLNERMTHI
VVGTPSESEKREARSVAASGVIQVVIPSWLEDCDREKKEIPVHNIYTANHLILPRDSACLTKGS
FARMSSMEQTKNTHDQTMVYDSSSRSINVSNGPATLLGKNKEAMQEFGRKDEIHTGRKIVSPTQ
KETLISLVTCESKEQRSIQCEFSGQNDQERKSSVFKGETFCFSHSFPEDRRPQIVEWVNQGGGE
VVNDPLINNAHFTIECHGGFQSTETTQTIYVSSHWVRNCLKVGCLLAVSSHILYSPLPCQTPLP
GFESLCICSSQHNEKNVELLRNLSVVLGADFVERLTRKVTHLICNFAKGDKYVRASKWGIISVT
PDWLYECVRQNQVVCTDNFHPRELTTQDREAGSQFHTQFVPMASRDSMSLPVSHSEDREKIQSF
AGKSGCGKGEVYNRLGEIGKEQTFPSKKAKLLRDGQESDVFPVRELPSNCDRPSHSGDGIVTGY
DVASGREVPDVADTIEDLLEQTSKIQDQKSPGRILEKTAAEGDKYKVARKWGHIQIVTRKWFQQ
SIDKKVCLNEESYPVLGSIPLTRGVRDLGVHNGLEKFPSAATASAADSYVSCAQSRDSDIEASA
SQNVFPTSMNPSTDVKEPGGGPTARPQEQNIDGCTARDSESEDNDLYLSDCRIFLLGFEASEMR
KLAKLVRRGGGSRYMLLNERMTHIVVGTPSESEKREARSVAASGVIQVVIPSWLEDCDREKKEI
PVHNIYTANHLILPRDSACLTKGSFARMSSMEQTKNTHDQTMVYDSSSRSINVSNGPATLLGKN
KEAMQEFGRKDEIHTGRKIVSPTQKETLISLVTCESKEQRSIQCEFSGQNDQERKSSVFKGETF
CFSHSFPEDRRPQIVEWVNQGGGEVVNDPLINNAHFTIECHGGFQSTETTQTIYVSSHWVRNCL
KVGCLLAVSSHILYSPLPCQTPLPGFESLCICSSQHNEKNVELLRNLSVVLGADFVERLTRKVT
HLICNFAKGDKYVRASKWGIISVTPDWLYECVRQNQVVCTDNFHPRELTTQDREAGSQFHTQFV
PMASRDSMSLPVSHSEDREKIQSFAGKSGCGKGEVYNRLGEIGKEQTFPSKKAKLLRDGQESDV
FPVRELPSNCDRPSHSGDGIVTGYDVASGREVPDVADTIEDLLEQTSKIQDQKSPGRILEKT(+
)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017