Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G77320_circ_g.1 |
ID in PlantcircBase | ath_circ_010615 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 29059001-29061897 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | PcircRNA_finder |
Parent gene | AT1G77320 |
Parent gene annotation |
transcription coactivators |
Parent gene strand | + |
Alternative splicing | AT1G77320_circ_g.2 AT1G77320_circ_g.3 |
Support reads | 1 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | GT-AC |
Number of exons covered | AT1G77320.2:8 AT1G77320.3:8 AT1G77320.1:8 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.136024822 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
29059412-29061894(+) |
Potential amino acid sequence |
MNPSTDVKEPGGGPTARPQEQNIDGCTARDSESEDNDLYLSDCRIFLLGFEASEMRKLAKLVRR GGGSRYMLLNERMTHIVVGTPSESEKREARSVAASGVIQVVIPSWLEDCDREKKEIPVHNIYTA NHLILPRDSACLTKGSFARMSSMEQTKNTHDQTMVYDSSSRSINVSNGPATLLGKNKEAMQEFG RKDEIHTGRKIVSPTQKETLISLVTCESKEQRSIQCEFSGQNDQERKSSVFKGETFCFSHSFPE DRRPQIVEWVNQGGGEVVNDPLINNAHFTIECHGGFQSTETTQTIYVSSHWVRNCLKVGCLLAV SSHILYSPLPCQTPLPGFESLCICSSQHNEKNVELLRNLSVVLGADFVERLTRKVTHLICNFAK GDKYVRASKWGIISVTPDWLYECVRQNQVVCTDNFHPRELTTQDREAGSQFHTQFVPMASRDSM SLPVSHSEDREKIQSFAGKSGCGKGEVYNRLGEIGKEQTFPSKKAKLLRDGQESDVFPVRELPS NCDRPSHSGDGIVTGYDVASGREVPDVADTIEDLLEQTSKIQDQKSPGRILEKTAAEGDKYKVA RKWGHIQIVTRKWFQQSIDKKVCLNEESYPVLGSIPLTRGVRDLGVHNGLEKFPSAATASAADS YVSCAQSRDSDIEASASQNVFPTSMNPSTDVKEPGGGPTARPQEQNIDGCTARDSESEDNDLYL SDCRIFLLGFEASEMRKLAKLVRRGGGSRYMLLNERMTHIVVGTPSESEKREARSVAASGVIQV VIPSWLEDCDREKKEIPVHNIYTANHLILPRDSACLTKGSFARMSSMEQTKNTHDQTMVYDSSS RSINVSNGPATLLGKNKEAMQEFGRKDEIHTGRKIVSPTQKETLISLVTCESKEQRSIQCEFSG QNDQERKSSVFKGETFCFSHSFPEDRRPQIVEWVNQGGGEVVNDPLINNAHFTIECHGGFQSTE TTQTIYVSSHWVRNCLKVGCLLAVSSHILYSPLPCQTPLPGFESLCICSSQHNEKNVELLRNLS VVLGADFVERLTRKVTHLICNFAKGDKYVRASKWGIISVTPDWLYECVRQNQVVCTDNFHPREL TTQDREAGSQFHTQFVPMASRDSMSLPVSHSEDREKIQSFAGKSGCGKGEVYNRLGEIGKEQTF PSKKAKLLRDGQESDVFPVRELPSNCDRPSHSGDGIVTGYDVASGREVPDVADTIEDLLEQTSK IQDQKSPGRILEKTAAEGDKYKVARKWGHIQIVTRKWFQQSIDKKVCLNEESYPVLGSIPLTRG VRDLGVHNGLEKFPSAATASAADSYVSCAQSRDSDIEASASQNVFPTSMNPSTDVKEPGGGPTA RPQEQNIDGCTARDSESEDNDLYLSDCRIFLLGFEASEMRKLAKLVRRGGGSRYMLLNERMTHI VVGTPSESEKREARSVAASGVIQVVIPSWLEDCDREKKEIPVHNIYTANHLILPRDSACLTKGS FARMSSMEQTKNTHDQTMVYDSSSRSINVSNGPATLLGKNKEAMQEFGRKDEIHTGRKIVSPTQ KETLISLVTCESKEQRSIQCEFSGQNDQERKSSVFKGETFCFSHSFPEDRRPQIVEWVNQGGGE VVNDPLINNAHFTIECHGGFQSTETTQTIYVSSHWVRNCLKVGCLLAVSSHILYSPLPCQTPLP GFESLCICSSQHNEKNVELLRNLSVVLGADFVERLTRKVTHLICNFAKGDKYVRASKWGIISVT PDWLYECVRQNQVVCTDNFHPRELTTQDREAGSQFHTQFVPMASRDSMSLPVSHSEDREKIQSF AGKSGCGKGEVYNRLGEIGKEQTFPSKKAKLLRDGQESDVFPVRELPSNCDRPSHSGDGIVTGY DVASGREVPDVADTIEDLLEQTSKIQDQKSPGRILEKTAAEGDKYKVARKWGHIQIVTRKWFQQ SIDKKVCLNEESYPVLGSIPLTRGVRDLGVHNGLEKFPSAATASAADSYVSCAQSRDSDIEASA SQNVFPTSMNPSTDVKEPGGGPTARPQEQNIDGCTARDSESEDNDLYLSDCRIFLLGFEASEMR KLAKLVRRGGGSRYMLLNERMTHIVVGTPSESEKREARSVAASGVIQVVIPSWLEDCDREKKEI PVHNIYTANHLILPRDSACLTKGSFARMSSMEQTKNTHDQTMVYDSSSRSINVSNGPATLLGKN KEAMQEFGRKDEIHTGRKIVSPTQKETLISLVTCESKEQRSIQCEFSGQNDQERKSSVFKGETF CFSHSFPEDRRPQIVEWVNQGGGEVVNDPLINNAHFTIECHGGFQSTETTQTIYVSSHWVRNCL KVGCLLAVSSHILYSPLPCQTPLPGFESLCICSSQHNEKNVELLRNLSVVLGADFVERLTRKVT HLICNFAKGDKYVRASKWGIISVTPDWLYECVRQNQVVCTDNFHPRELTTQDREAGSQFHTQFV PMASRDSMSLPVSHSEDREKIQSFAGKSGCGKGEVYNRLGEIGKEQTFPSKKAKLLRDGQESDV FPVRELPSNCDRPSHSGDGIVTGYDVASGREVPDVADTIEDLLEQTSKIQDQKSPGRILEKT(+ ) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |