Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | AT1G77320_circ_g.1 |
| ID in PlantcircBase | ath_circ_010615 |
| Alias | NA |
| Organism | Arabidpsis thaliana |
| Position | chr1: 29059001-29061897 JBrowse» |
| Reference genome | TAIR10.38 |
| Type | e-circRNA |
| Identification method | PcircRNA_finder |
| Parent gene | AT1G77320 |
| Parent gene annotation |
transcription coactivators |
| Parent gene strand | + |
| Alternative splicing | AT1G77320_circ_g.2 AT1G77320_circ_g.3 |
| Support reads | 1 |
| Tissues | whole_plant |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AC |
| Number of exons covered | AT1G77320.2:8 AT1G77320.3:8 AT1G77320.1:8 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.136024822 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
29059412-29061894(+) |
| Potential amino acid sequence |
MNPSTDVKEPGGGPTARPQEQNIDGCTARDSESEDNDLYLSDCRIFLLGFEASEMRKLAKLVRR GGGSRYMLLNERMTHIVVGTPSESEKREARSVAASGVIQVVIPSWLEDCDREKKEIPVHNIYTA NHLILPRDSACLTKGSFARMSSMEQTKNTHDQTMVYDSSSRSINVSNGPATLLGKNKEAMQEFG RKDEIHTGRKIVSPTQKETLISLVTCESKEQRSIQCEFSGQNDQERKSSVFKGETFCFSHSFPE DRRPQIVEWVNQGGGEVVNDPLINNAHFTIECHGGFQSTETTQTIYVSSHWVRNCLKVGCLLAV SSHILYSPLPCQTPLPGFESLCICSSQHNEKNVELLRNLSVVLGADFVERLTRKVTHLICNFAK GDKYVRASKWGIISVTPDWLYECVRQNQVVCTDNFHPRELTTQDREAGSQFHTQFVPMASRDSM SLPVSHSEDREKIQSFAGKSGCGKGEVYNRLGEIGKEQTFPSKKAKLLRDGQESDVFPVRELPS NCDRPSHSGDGIVTGYDVASGREVPDVADTIEDLLEQTSKIQDQKSPGRILEKTAAEGDKYKVA RKWGHIQIVTRKWFQQSIDKKVCLNEESYPVLGSIPLTRGVRDLGVHNGLEKFPSAATASAADS YVSCAQSRDSDIEASASQNVFPTSMNPSTDVKEPGGGPTARPQEQNIDGCTARDSESEDNDLYL SDCRIFLLGFEASEMRKLAKLVRRGGGSRYMLLNERMTHIVVGTPSESEKREARSVAASGVIQV VIPSWLEDCDREKKEIPVHNIYTANHLILPRDSACLTKGSFARMSSMEQTKNTHDQTMVYDSSS RSINVSNGPATLLGKNKEAMQEFGRKDEIHTGRKIVSPTQKETLISLVTCESKEQRSIQCEFSG QNDQERKSSVFKGETFCFSHSFPEDRRPQIVEWVNQGGGEVVNDPLINNAHFTIECHGGFQSTE TTQTIYVSSHWVRNCLKVGCLLAVSSHILYSPLPCQTPLPGFESLCICSSQHNEKNVELLRNLS VVLGADFVERLTRKVTHLICNFAKGDKYVRASKWGIISVTPDWLYECVRQNQVVCTDNFHPREL TTQDREAGSQFHTQFVPMASRDSMSLPVSHSEDREKIQSFAGKSGCGKGEVYNRLGEIGKEQTF PSKKAKLLRDGQESDVFPVRELPSNCDRPSHSGDGIVTGYDVASGREVPDVADTIEDLLEQTSK IQDQKSPGRILEKTAAEGDKYKVARKWGHIQIVTRKWFQQSIDKKVCLNEESYPVLGSIPLTRG VRDLGVHNGLEKFPSAATASAADSYVSCAQSRDSDIEASASQNVFPTSMNPSTDVKEPGGGPTA RPQEQNIDGCTARDSESEDNDLYLSDCRIFLLGFEASEMRKLAKLVRRGGGSRYMLLNERMTHI VVGTPSESEKREARSVAASGVIQVVIPSWLEDCDREKKEIPVHNIYTANHLILPRDSACLTKGS FARMSSMEQTKNTHDQTMVYDSSSRSINVSNGPATLLGKNKEAMQEFGRKDEIHTGRKIVSPTQ KETLISLVTCESKEQRSIQCEFSGQNDQERKSSVFKGETFCFSHSFPEDRRPQIVEWVNQGGGE VVNDPLINNAHFTIECHGGFQSTETTQTIYVSSHWVRNCLKVGCLLAVSSHILYSPLPCQTPLP GFESLCICSSQHNEKNVELLRNLSVVLGADFVERLTRKVTHLICNFAKGDKYVRASKWGIISVT PDWLYECVRQNQVVCTDNFHPRELTTQDREAGSQFHTQFVPMASRDSMSLPVSHSEDREKIQSF AGKSGCGKGEVYNRLGEIGKEQTFPSKKAKLLRDGQESDVFPVRELPSNCDRPSHSGDGIVTGY DVASGREVPDVADTIEDLLEQTSKIQDQKSPGRILEKTAAEGDKYKVARKWGHIQIVTRKWFQQ SIDKKVCLNEESYPVLGSIPLTRGVRDLGVHNGLEKFPSAATASAADSYVSCAQSRDSDIEASA SQNVFPTSMNPSTDVKEPGGGPTARPQEQNIDGCTARDSESEDNDLYLSDCRIFLLGFEASEMR KLAKLVRRGGGSRYMLLNERMTHIVVGTPSESEKREARSVAASGVIQVVIPSWLEDCDREKKEI PVHNIYTANHLILPRDSACLTKGSFARMSSMEQTKNTHDQTMVYDSSSRSINVSNGPATLLGKN KEAMQEFGRKDEIHTGRKIVSPTQKETLISLVTCESKEQRSIQCEFSGQNDQERKSSVFKGETF CFSHSFPEDRRPQIVEWVNQGGGEVVNDPLINNAHFTIECHGGFQSTETTQTIYVSSHWVRNCL KVGCLLAVSSHILYSPLPCQTPLPGFESLCICSSQHNEKNVELLRNLSVVLGADFVERLTRKVT HLICNFAKGDKYVRASKWGIISVTPDWLYECVRQNQVVCTDNFHPRELTTQDREAGSQFHTQFV PMASRDSMSLPVSHSEDREKIQSFAGKSGCGKGEVYNRLGEIGKEQTFPSKKAKLLRDGQESDV FPVRELPSNCDRPSHSGDGIVTGYDVASGREVPDVADTIEDLLEQTSKIQDQKSPGRILEKT(+ ) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |