Detail information of AT4G19490_circ_g.2


General Information
CircRNA Name AT4G19490_circ_g.2
ID in PlantcircBase ath_circ_031700
Alias NA
Organism Arabidpsis thaliana
Position chr4: 10618049-10620857  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT4G19490
Parent gene annotation Vacuolar protein sorting-associated protein 54, chloroplastic
Parent gene strand +
Alternative splicing AT4G19490_circ_g.1 AT4G19490_circ_g.3 AT4G19490_circ_g.4 AT4G19490_circ_g.5
Support reads 1
Tissues aerial
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT4G19490.2:8
AT4G19490.1:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGCTGGTGTATCTTCAGCTACGAATAATCAAAGTAATCAGAAGGCGCACGGAAAATCTAACCT
TTTCTATCAAGGAGTTGGTTACCACATGGTAAACTGtattctcacttcagaattcatgcgtatc
tccatacatgatactggggagatagatgtactgattttatctgcagcaaatatacggggatcca
tttcatct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TATTCTCACTTCAGAATTCATGCGTATCTCCATACATGATACTGGGGAGATAGATGTACTGATT
TTATCTGCAGCAAATATACGGGGATCCATTTCATCTAACGGGAATACCGGCGAAGAAGTAAGTC
TCATCCGGTACTGAATAGAAGATCCTAAACTGTGAGAAGTGGTAGATTATCAGAAAAAGAACTG
AAACAACGACCATCATGACTCTGAATATTGGGCTTACGCCTTTGCAGGTTAAGTTAGAAGAAGA
GGATACCTCTACCTTATGTGATCGGCTTCTTCCTTTAGTTATTGGATTGCTAAGAACGGTGAGT
GACCAGACCTGATTATTTTTCTAACAAATGCTACCACTGAAGTTGACCTGATTATTTTTCCAAC
ATATGCTACCACTGATTGTTTTAATTTCTTCGTTTATGCCATTCCCGGTCTTTATTGTTGGTTC
ATAGTGCTCATTCAGGGCATAGTCTTAATTCAGTTTCTCATGTATTGTTCTTTGAACTGTTTTC
ATAGGCAAAGTTCCCGTCAATTTTGAGGATGTATCGTGATACACTCACATCCGAAATGAAAAAT
GCAATCAAGAAAGCAGTTGCTGATCTGCTTCCCATTCTTGTTGCAAGATCGCTCGAATCTGATT
TTTCACATGGGGAGCGCTCTGTAGATGATGGTGAGATTTTAATTGTTCTTACTATGTATACAGA
TTGTCATGCGACTTAGTTTGTGCATGAGAACATGGTTGAACATAAGTTTGTATTTGAAATGTGT
AGAATTCCTCTAACACACATTCTCATCAAGGTCAACACCATAGAAACGACAGTATTGGATTCTT
GTTTTAGCAAATGCCCTTATCAATATTGCTGGATATTCCCATTTGCTTGTTTTCTTATTAAATC
TCATTTGATCTGAGACCCGACTTGGAAGTAATTTACATGGAAATTGGTCAACTGATGAAGAATG
TTGGCTGAAAACTTACTTTTAAGGATTTAATGAAATTTTATCATCCTTCTCTTCGGAAATGTAT
TCTACTTAGGTGGTAGTTTGTCTCTCCAGAAACCATACTTACTCCTAGTGCATATACAGGTGGT
GGCTTATCTCTCGCGAGCAAATTGAGGACTCTGTCATCTGAGGCTTTTGTTAATCTCTTAACTG
CTATATTTAAGATTGTTCAGGTAATATATGCATCAATTATGGAACTTTTAATTTCTTAAACAAG
CATTATATAGGAAGTTATACATATATATTCTATGTTAAACATCTGGAAGCCTTTTTGTTTTGGT
TTTGATACATCTACCATATAATAGAAGCTTGGAAATTTTCACTCTCTGAAGCAGTTAGATGTTT
GATTAAGATGTAATATGATTTCATTTCATTTAGTGAATGCAGGCACATCTAGTCCGGGCTTCGG
AAGTGAAAAAAGCAATTGAATGGATTCTCTGCAATATCGATGGACATTATGCCGCTGATTCAGT
TGCAGCTGCAATTGCTGTTGGTGCTGTAGCAGCCGAAACAGCTCAAGAAATAGGTTTCCAAGGC
GGGTCATTAGTGTCTTCTCCATTGGGTAAGGCTACCTCAAAGGCCCCTCCATTGCAGGGAAAAT
CGAGTGATGCATCAAGCTTGATGAACATGTCAAGAAACTTCAGGTTTCTTAGTCTATTTTTTTA
ATGCATTTTTCCAAATTCTCGCAGCTGTATGTGACACAGGCCCTTGCTTCTACGCTTGGAACTA
AATTAGGCATTTTTCTGATTTATATTAGGGCCGATGTCTTGAGAGAAAATACAGAAGCTGTCTT
TGCGGCTTGTGAGGTTACTCATGGTAGGTGGGCAAAGCTACTAGGAGTTCGCGCTCTTCTTCAT
CCAAAATTGAAATTGCAAGAGTTCATGAGCATTTATGATCTGACCCAAGAATTTATAACATCTA
CGGAGAAGGTATTTGTTCTAAACTTTTCTTCATAAATGAGATAAGAAATTGCATTGCTTATTCT
TGCGTGACATTTGTACTGAATTTAACAGATTGGTGGAAGGTTGGGTTCTAGTATTCGTGGGACG
CTGCAATCACAAGCCAAAGCCTTTGTGGACTCCCAGCACGAATCTCGGGTTAGTCTCTGTGTAG
AATTATAGATTATGTTTATAAGTTTTACAGCAGGCACATCTACACTTTTGTTTAGTTTCAAAAA
AGAAAAGTGGTTAAAAAGTGGCACAGAAAGTTATACCAAGAGCAATAAGCCCAAGCCATATGAT
CTATACTTTCTCTAGCAGAAAGGTTAAACTTTCTTTCGGTAACCAATTAGTGTTGAACTATATT
GACTTCATCCCATAGATGCACATTCTTCTATCTTTTATCATCTAACTTCTTTCATTAACAAGAG
TTCTGCTTGTTATTCTAATTTGTATTTTTTGTTACTGTAGATGACAAAACTAAAAGCTGTGCTT
GATCAAGAAACATGGGATGAGATAGATGTTCCTGAAGAATTTCAATCCATAATCAGTTCTCTTT
TTGCATCCCAGCGGTTGATCTCTGGGAAAGTTGATGATGCTGATCTTAATTCATACCACAGTAA
TCGGCTCCCTCTCAATGGGTCTCTCACTTCTGGATCTGGGGATCAAAATAGTGAATTACGAAAT
GAAAAATCTGAATCTAGTGAAGGTTCTGTAGTTAGTGATGCACAAGTGAAACCCACAGTCTCAC
CTGAGTCTCTTGAAAGAAGCAAGGCTGGTGTATCTTCAGCTACGAATAATCAAAGTAATCAGAA
GGCGCACGGAAAATCTAACCTTTTCTATCAAGGAGTTGGTTACCACATGGTAAACTG
Conservation Information
Conserved circRNAs NA
PMCS 0.156606206
Functional Information
Coding potential Y
Potential coding position 10618068-10620854(+)
Potential amino acid sequence MRISIHDTGEIDVLILSAANIRGSISSNGNTGEEVKLEEEDTSTLCDRLLPLVIGLLRTAKFPS
ILRMYRDTLTSEMKNAIKKAVADLLPILVARSLESDFSHGERSVDDGGGLSLASKLRTLSSEAF
VNLLTAIFKIVQAHLVRASEVKKAIEWILCNIDGHYAADSVAAAIAVGAVAAETAQEIGFQGGS
LVSSPLGKATSKAPPLQGKSSDASSLMNMSRNFRADVLRENTEAVFAACEVTHGRWAKLLGVRA
LLHPKLKLQEFMSIYDLTQEFITSTEKIGGRLGSSIRGTLQSQAKAFVDSQHESRMTKLKAVLD
QETWDEIDVPEEFQSIISSLFASQRLISGKVDDADLNSYHSNRLPLNGSLTSGSGDQNSELRNE
KSESSEGSVVSDAQVKPTVSPESLERSKAGVSSATNNQSNQKAHGKSNLFYQGVGYHMVNCILT
SEFMRISIHDTGEIDVLILSAANIRGSISSNGNTGEEVKLEEEDTSTLCDRLLPLVIGLLRTAK
FPSILRMYRDTLTSEMKNAIKKAVADLLPILVARSLESDFSHGERSVDDGGGLSLASKLRTLSS
EAFVNLLTAIFKIVQAHLVRASEVKKAIEWILCNIDGHYAADSVAAAIAVGAVAAETAQEIGFQ
GGSLVSSPLGKATSKAPPLQGKSSDASSLMNMSRNFRADVLRENTEAVFAACEVTHGRWAKLLG
VRALLHPKLKLQEFMSIYDLTQEFITSTEKIGGRLGSSIRGTLQSQAKAFVDSQHESRMTKLKA
VLDQETWDEIDVPEEFQSIISSLFASQRLISGKVDDADLNSYHSNRLPLNGSLTSGSGDQNSEL
RNEKSESSEGSVVSDAQVKPTVSPESLERSKAGVSSATNNQSNQKAHGKSNLFYQGVGYHMVNC
ILTSEFMRISIHDTGEIDVLILSAANIRGSISSNGNTGEEVKLEEEDTSTLCDRLLPLVIGLLR
TAKFPSILRMYRDTLTSEMKNAIKKAVADLLPILVARSLESDFSHGERSVDDGGGLSLASKLRT
LSSEAFVNLLTAIFKIVQAHLVRASEVKKAIEWILCNIDGHYAADSVAAAIAVGAVAAETAQEI
GFQGGSLVSSPLGKATSKAPPLQGKSSDASSLMNMSRNFRADVLRENTEAVFAACEVTHGRWAK
LLGVRALLHPKLKLQEFMSIYDLTQEFITSTEKIGGRLGSSIRGTLQSQAKAFVDSQHESRMTK
LKAVLDQETWDEIDVPEEFQSIISSLFASQRLISGKVDDADLNSYHSNRLPLNGSLTSGSGDQN
SELRNEKSESSEGSVVSDAQVKPTVSPESLERSKAGVSSATNNQSNQKAHGKSNLFYQGVGYHM
VNCILTSEFMRISIHDTGEIDVLILSAANIRGSISSNGNTGEEVKLEEEDTSTLCDRLLPLVIG
LLRTAKFPSILRMYRDTLTSEMKNAIKKAVADLLPILVARSLESDFSHGERSVDDGGGLSLASK
LRTLSSEAFVNLLTAIFKIVQAHLVRASEVKKAIEWILCNIDGHYAADSVAAAIAVGAVAAETA
QEIGFQGGSLVSSPLGKATSKAPPLQGKSSDASSLMNMSRNFRADVLRENTEAVFAACEVTHGR
WAKLLGVRALLHPKLKLQEFMSIYDLTQEFITSTEKIGGRLGSSIRGTLQSQAKAFVDSQHESR
MTKLKAVLDQETWDEIDVPEEFQSIISSLFASQRLISGKVDDADLNSYHSNRLPLNGSLTSGSG
DQNSELRNEKSESSEGSVVSDAQVKPTVSPESLERSKAGVSSATNNQSNQKAHGKSNLFYQGVG
YHMVN(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017